| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,312,640 – 9,312,694 |
| Length | 54 |
| Max. P | 0.998749 |
| Location | 9,312,640 – 9,312,694 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 60.53 |
| Shannon entropy | 0.60548 |
| G+C content | 0.48870 |
| Mean single sequence MFE | -17.18 |
| Consensus MFE | -8.12 |
| Energy contribution | -8.75 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.47 |
| SVM RNA-class probability | 0.998749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9312640 54 + 22422827 ACAUAGGGGAUGGUGGAGGGGCUAUAGGGACGAUAUAGCCACAUACUCAUCUGC------ .....(.((((((((....(((((((.......)))))))...))).))))).)------ ( -18.10, z-score = -3.37, R) >droSim1.chrX 7412408 54 + 17042790 ACAGAGGGGAAGGUGGCGGGGCUAUAGGGGCGAUAUAGCCACAUACUCAUCUGC------ .((((.(((...(((....(((((((.......))))))).))).))).)))).------ ( -17.80, z-score = -2.76, R) >droSec1.super_15 82263 54 + 1954846 GCAGAGGAGAAGGUGGCGGGGCUAUAGGGGCGAUAUAGCCACAUACUCAUCUGC------ (((((.(((...(((....(((((((.......))))))).))).))).)))))------ ( -21.20, z-score = -3.85, R) >droMoj3.scaffold_6473 15696248 59 + 16943266 AUAUAGUAUAUAUUUAUAUACUUGCAUGUAUUGGUUCGC-AUACGUGUAUCUAAACCUAC ....(((((((....)))))))(((((((((........-)))))))))........... ( -11.60, z-score = -1.15, R) >consensus ACAGAGGAGAAGGUGGCGGGGCUAUAGGGACGAUAUAGCCACAUACUCAUCUGC______ .......((((((......(((((((.......)))))))......))))))........ ( -8.12 = -8.75 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:05 2011