| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,311,010 – 9,311,111 |
| Length | 101 |
| Max. P | 0.799903 |
| Location | 9,311,010 – 9,311,111 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 80.06 |
| Shannon entropy | 0.35514 |
| G+C content | 0.50578 |
| Mean single sequence MFE | -34.36 |
| Consensus MFE | -17.39 |
| Energy contribution | -18.24 |
| Covariance contribution | 0.85 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9311010 101 - 22422827 AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGUCGGUGGAUAUAGCAUUUCCAUUGCCCAUUCCC--UUACCAUCCCUUUCAUUUCUCGAA------ ....(((((((((.((.((..(((.((((.(((((((.((((..((....))..))))..))))))).....)))))--))..)).)).))))))))).....------ ( -31.10, z-score = -1.92, R) >droSim1.chrX 7410876 106 - 17042790 AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGGCGAUGGAUGUAGCAUUUCCAUUGCCCAUUGCCCAUUCCCUUCCCUUCAAUUUCGCGCGCAA--- ...((((((((((.((.....(((.(((...((((.(((.((.(((((((((.........))))))))))).))))))))))))))))))).)))))).......--- ( -38.40, z-score = -2.15, R) >droSec1.super_15 80748 106 - 1954846 AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGACGAUGGAUGUAGCAUUUCCAUUGCCCAUUGCCCAUUCCCUUCCCUUCCACUUCGCGCGCAA--- .......(((((((((..(..(((.(((...((((.(((.((.(.(((((((.........))))))).))).)))))))))))))..)..)))))))))......--- ( -37.50, z-score = -2.58, R) >droYak2.chrX 17899935 97 - 21770863 AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAG--------UGCGGCGAUGGAUAUAGCAUUUCCAUUG-CCAUUUCC--CUUCCAUCUCUCCAAACGAGAAAAUACAA- ....((((.(((((.(((.((....))...))--------)..(((((((((.........)))))))-))))))).--))))..((((.......))))........- ( -28.70, z-score = -2.56, R) >droEre2.scaffold_4690 12944031 107 + 18748788 AACCGAGAUGAAGUGACUGCCAAGUGGAAAAGUGGAGCGCUGCGGCGGUGGAUAUAGCAUUUCCAUUG-CCAUUGCC-AUUGCCAUCCCUUCCAUCUCGUAAAAAGCAA ...(((((((.((((.((.(((..(....)..)))))))))..((((((((.....(((.......))-).....))-))))))........))))))).......... ( -36.10, z-score = -2.33, R) >consensus AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGGCGAUGGAUAUAGCAUUUCCAUUGCCCAUUGCC_AUUCCCAUCCCUUCCAUUUCGCGAACAA___ ...((((((((((..(((....)))(((...((((....))))(((((((((.........))))))).))..............))))))).)))))).......... (-17.39 = -18.24 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:04 2011