| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,310,075 – 9,310,167 |
| Length | 92 |
| Max. P | 0.783707 |
| Location | 9,310,075 – 9,310,167 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 81.05 |
| Shannon entropy | 0.28894 |
| G+C content | 0.63949 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -13.45 |
| Energy contribution | -13.07 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9310075 92 + 22422827 CGGAGCAGGUGCGUCCUUAUCGACGUCGUCGCCGCCUCUUACCUUUCUCCACACCACCCAUUCCAUCCAU---UUCCGCCCAUCGCUCCCUUCAG---------- .(((((.((((((((......)))))....)))((...................................---....)).....)))))......---------- ( -15.23, z-score = -1.61, R) >droSim1.chrX 7409921 92 + 17042790 CGGAGCAGGUGCGUCCUUAUCGACGUCGUCGCCGCCUCUUACCUUUCUCCACGCCCCCCAUUCCAUCCAC---UCCCGCCCAUCGCUCCCUCCAG---------- .(((((.((((((((......)))))....)))((.................))................---...........)))))......---------- ( -16.13, z-score = -1.31, R) >droSec1.super_15 79799 92 + 1954846 CGGAGCAGGUGCGUCCUUAUCGACGUCGUCGCCGCCUCUUACCUUUCUCCACGGCCCCCAUUCCUACCAU---UCCCGCCCAUCGCUCCCUCCAG---------- .(((((.(..(((((......)))).)..)((((.................))))...............---...........)))))......---------- ( -20.33, z-score = -2.00, R) >droEre2.scaffold_4690 12942995 105 - 18748788 CGGAGCAGGUGCGUCCUUAUCGACGUCGUCGCUACCCCUUGCCUUUCUCCACGCCCCUUAUCCCCAGCACCCCUUCCGCCCACCACCCACCGCCGUUCCCUCCAG (((((..((((((((......)))......((........))........................)))))..)))))........................... ( -18.80, z-score = -1.76, R) >consensus CGGAGCAGGUGCGUCCUUAUCGACGUCGUCGCCGCCUCUUACCUUUCUCCACGCCCCCCAUUCCAACCAC___UCCCGCCCAUCGCUCCCUCCAG__________ .((((.(((((((((......))))).((....)).....))))..))))....................................................... (-13.45 = -13.07 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:03 2011