| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,737,004 – 10,737,098 |
| Length | 94 |
| Max. P | 0.791311 |
| Location | 10,737,004 – 10,737,098 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 60.47 |
| Shannon entropy | 0.66588 |
| G+C content | 0.38645 |
| Mean single sequence MFE | -21.94 |
| Consensus MFE | -11.24 |
| Energy contribution | -12.52 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10737004 94 + 23011544 CUUGCUUUCUGGAUUUUCCAACUUGUUAGUCUGACUAGCCUGUAGUUUGGCAAGAAAGAAAAUCCAAGGGGAACGAGAUGAGCAGUUUAUAUUU------------------ .(((((((((((((((((...((((((((.(((.(......)))).))))))))...))))))))...(....).))).)))))).........------------------ ( -25.60, z-score = -1.52, R) >droSim1.chr2L 10536371 94 + 22036055 CUUGCUUUCUGGGUUUUCCAACUUGUUAGUCUGACUAGCCUGUAGUUUGGCAAGAAUGAAAAUUCAAGGGUAACGAGAUGAGCAAUUCAUAUUG------------------ .((((((..(((.....))).(((((((.(((.....(((........)))..((((....)))).))).)))))))..)))))).........------------------ ( -25.90, z-score = -1.91, R) >droSec1.super_3 6154643 94 + 7220098 CUUGCUUUCUGGGUUUUCCAACUUGUUAGUCUGACUAGCCUGUGGUUUGGCAAGAAUGAAAAUCCAAGGGGAACGAGAUGAGCAGUUCAUAUUG------------------ .(((((((((((((((((...((((((((.((.((......)))).))))))))...))))))))...(....).))).)))))).........------------------ ( -24.70, z-score = -0.56, R) >droYak2.chr2L 7141542 85 + 22324452 GUUGCUCUCCGGAUUUUCUAGCUUGCUAGUCUGACUAGCCCGUAGUUUGGCAUGAAUACAAUUCCAAUGGGAAUGAGAUCAGCAG--------------------------- ((((.((((((((....((((....))))))))....(((........))).........(((((....))))))))).))))..--------------------------- ( -21.80, z-score = -0.50, R) >droWil1.scaffold_180764 204682 112 - 3949147 UUAGCGUUUUAGUCAAUCGAAUUCAAUUACUUGUUUAUUUAAUUUUUUAUCACAUACAGACGUCAAACUUAUGACAAAUAAAAACUAGUCAACUAGAUUUGAGAUAAUACUU .....((.(((.....((((((...........(((((((.........((.......)).((((......)))))))))))..((((....))))))))))..))).)).. ( -11.70, z-score = 0.58, R) >consensus CUUGCUUUCUGGAUUUUCCAACUUGUUAGUCUGACUAGCCUGUAGUUUGGCAAGAAUGAAAAUCCAAGGGGAACGAGAUGAGCAGUUCAUAUUG__________________ ((((.(((((((((((((...((((((((.(((.(......)))).))))))))...)))))))))..)))).))))................................... (-11.24 = -12.52 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:49 2011