| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,308,633 – 9,308,684 |
| Length | 51 |
| Max. P | 0.526658 |
| Location | 9,308,633 – 9,308,684 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 83.53 |
| Shannon entropy | 0.29287 |
| G+C content | 0.52941 |
| Mean single sequence MFE | -12.92 |
| Consensus MFE | -8.48 |
| Energy contribution | -9.28 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.526658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9308633 51 + 22422827 GCAGAGCCACCGACUGUUUGAUGAGGUGGAACCUUUGCUAUUGACACACGC (((((((((((.............)))))...))))))............. ( -13.82, z-score = -2.04, R) >dp4.chrXL_group1a 1460272 51 - 9151740 GGGAGGGGGAUGACUGUUUGACGAGGAGAAAACACCGCUAUUGACAGUUAC ..........((((((((......((........))......)))))))). ( -9.70, z-score = -0.97, R) >droSim1.chrX 7408450 51 + 17042790 GCAGAGCCACCGACUGUUUGAUGAGGUGGAACCUUUGCUAUUGACACACGC (((((((((((.............)))))...))))))............. ( -13.82, z-score = -2.04, R) >droYak2.chrX 17897310 51 + 21770863 GCAGAGCCACCGACUGUUUGAUGAGGUGGAACCUUUGCUAUUGACACACGC (((((((((((.............)))))...))))))............. ( -13.82, z-score = -2.04, R) >droEre2.scaffold_4690 12941616 51 - 18748788 GCAGAGCCGCCGACUGUUUGAUGAGGUGGAACCUUUGCUAUUGACAGACGC (((((((((((.............)))))...))))))............. ( -13.42, z-score = -1.45, R) >consensus GCAGAGCCACCGACUGUUUGAUGAGGUGGAACCUUUGCUAUUGACACACGC (((((((((((.............)))))...))))))............. ( -8.48 = -9.28 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:00 2011