Locus 13798

Sequence ID dm3.chrX
Location 9,294,437 – 9,294,519
Length 82
Max. P 0.646949
window18982

overview

Window 2

Location 9,294,437 – 9,294,519
Length 82
Sequences 3
Columns 82
Reading direction forward
Mean pairwise identity 57.32
Shannon entropy 0.59046
G+C content 0.54135
Mean single sequence MFE -26.69
Consensus MFE -9.97
Energy contribution -10.10
Covariance contribution 0.13
Combinations/Pair 1.43
Mean z-score -1.64
Structure conservation index 0.37
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.33
SVM RNA-class probability 0.646949
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 9294437 82 + 22422827
UGGGGCGCAAUGGAUGAAAGGGGGGAGUGGGUUUGGGAAAGUGGGGCUUGGGAAAUUCCUAUUCCACUCUACCUGUCUCUGC
.(((((.((.....))...(((..(((((((..((((((................)))))).)))))))..))))))))... ( -25.39, z-score =  -0.47, R)
>droSec1.super_15 63554 82 + 1954846
UGGGGCGCAUUGGGUGAAAGGGGGGAGUGGGGUUGGGAAAAAGGGGCUUGGGAAAUUCCUAUUCCACUCUACCUGUCUCUGC
.(((((((.....))....(((..(((((((((.(((((................))))))))))))))..))))))))... ( -26.89, z-score =  -0.81, R)
>droWil1.scaffold_181096 9646679 70 - 12416693
---------AGGUGCGGAUCCGGAGACGGAGCAUGAGUAUGUGAAGUU---GAAGCUGAAGCUUUGCUUUACCUGCUGCCUU
---------((((((((.((((....))))..........(((((((.---(((((....)))))))))))))))).)))). ( -27.80, z-score =  -3.63, R)
>consensus
UGGGGCGCAAUGGGUGAAAGGGGGGAGUGGGCUUGGGAAAGUGGGGCUUGGGAAAUUCCUAUUCCACUCUACCUGUCUCUGC
..........((((.((...(((((((((((...((((.................))))...)))))))).))).)))))). ( -9.97 = -10.10 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:59 2011