| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,286,166 – 9,286,260 |
| Length | 94 |
| Max. P | 0.585491 |
| Location | 9,286,166 – 9,286,260 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 77.84 |
| Shannon entropy | 0.36742 |
| G+C content | 0.30559 |
| Mean single sequence MFE | -16.55 |
| Consensus MFE | -11.74 |
| Energy contribution | -11.67 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9286166 94 + 22422827 AAUCGAAUUUCAUGUGCUCCCCAU-GGGUAAUUAUAAUUUAAAAAGUUUGUUUAAAUAGCUUUUUAGAUUCAAUACGAGCUUGCGGUCUUUUUAU ....((....((...((((((...-.)).......(((((((((((((.........)))))))))))))......)))).))...))....... ( -15.80, z-score = -0.64, R) >droEre2.scaffold_4690 12916917 78 - 18748788 AAUCGAAUUUCAUGUGUUCUCCAA-GCGUAAUUAUAAUUUCAAGAGUUU-UU-GAAUAGCUUUUUGGAUUCACUAGGAGCU-------------- ........(((..(((...(((((-((...........((((((....)-))-)))..)))...))))..)))...)))..-------------- ( -10.72, z-score = 0.66, R) >droYak2.chrX 17878560 94 + 21770863 AAUCGAAUUUCAUGUGCUCUCCAAAGGGUAGUUAUAAUUUAAAAAGUUCGUU-UAAUCGCUUUUUAGAUUCAAUAAGAGCUCGUGCUGUUUUUAU ....((((..((((.(((((((....)).......((((((((((((.....-.....)))))))))))).....))))).))))..)))).... ( -19.50, z-score = -2.27, R) >droSec1.super_15 55179 88 + 1954846 -----AAUUUCAUGUGCUCCCCGU-GGGUAAUUAUAAUUUAAAAAGUUUGUU-AAAUAGCUUUUUAGAUUCAAUAUGAGCUUGCGGUCUUUUUAA -----...............(((.-.(((...((((((((((((((((....-....)))))))))))))..)))...)))..)))......... ( -20.20, z-score = -2.70, R) >consensus AAUCGAAUUUCAUGUGCUCCCCAA_GGGUAAUUAUAAUUUAAAAAGUUUGUU_AAAUAGCUUUUUAGAUUCAAUAAGAGCUUGCGGUCUUUUUAU ...............(((((((...))).......(((((((((((((.........)))))))))))))......))))............... (-11.74 = -11.67 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:58 2011