| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,271,440 – 9,271,495 |
| Length | 55 |
| Max. P | 0.964905 |
| Location | 9,271,440 – 9,271,495 |
|---|---|
| Length | 55 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 93.01 |
| Shannon entropy | 0.13247 |
| G+C content | 0.49556 |
| Mean single sequence MFE | -18.08 |
| Consensus MFE | -17.59 |
| Energy contribution | -17.23 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9271440 55 - 22422827 ACGCAGCGCAGGAUACGCAUUCCAUUGUUUUGC-CUGGAGAAAGUUUUGCGCUGUC ..((((((((((((.....(((((.........-.)))))...)))))))))))). ( -19.20, z-score = -2.19, R) >droAna3.scaffold_13334 1293517 56 + 1562580 AGAGAGUCUGGGAUACGCAUUCCAUUGUUGUGCUUUGGAGAAAGUUUUGCGCUGUC .((.(((.((((((....))))))..((...(((((....)))))...))))).)) ( -10.80, z-score = 0.55, R) >droEre2.scaffold_4690 12902399 55 + 18748788 ACGCAGCGCAGGAUACGCAUUCCAUUGUUUUGC-CUGGAGAAAGUUUUGCGCUGUC ..((((((((((((.....(((((.........-.)))))...)))))))))))). ( -19.20, z-score = -2.19, R) >droYak2.chrX 17863143 55 - 21770863 ACGCGGCGCAGGAUACGCAUUCCAUUGUUUUGC-UUGGAGAAAGUUUUGCGCUGUC ..((((((((((((.....(((((.........-.)))))...)))))))))))). ( -19.30, z-score = -2.07, R) >droSec1.super_15 40772 55 - 1954846 ACGCAGCGCAGGAUACGCAUUCCAUUGUUUUGC-UUGGAGAAAGUUUUGCGCUGUC ..((((((((((((.....(((((.........-.)))))...)))))))))))). ( -20.00, z-score = -2.59, R) >droSim1.chrX 7382831 55 - 17042790 ACGCAGCGCAGGAUACGCAUUCCAUUGUUUUGC-UUGGAGAAAGUUUUGCGCUGUC ..((((((((((((.....(((((.........-.)))))...)))))))))))). ( -20.00, z-score = -2.59, R) >consensus ACGCAGCGCAGGAUACGCAUUCCAUUGUUUUGC_UUGGAGAAAGUUUUGCGCUGUC ..((((((((((((.....(((((...........)))))...)))))))))))). (-17.59 = -17.23 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:56 2011