| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,256,810 – 9,256,864 |
| Length | 54 |
| Max. P | 0.690659 |
| Location | 9,256,810 – 9,256,864 |
|---|---|
| Length | 54 |
| Sequences | 10 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 77.12 |
| Shannon entropy | 0.48176 |
| G+C content | 0.61852 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -12.05 |
| Energy contribution | -11.51 |
| Covariance contribution | -0.54 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690659 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 9256810 54 + 22422827 GAUUCAGGACAAUAGCGACCGCCGGGGAAUCUGGGCGGACAGCCCACCUCAUCG (((..(((......((..(((((.((....)).)))))...))...))).))). ( -16.60, z-score = -0.85, R) >droSec1.super_15 26342 54 + 1954846 GAUUCCGGACAAUAGCGUCCGCCGGGGAAUCUGGGCGGACAGCCAACCUCAUCG (((...((......(((((((((.((....)).))))))).))...))..))). ( -19.30, z-score = -1.35, R) >droYak2.chrX 17849424 54 + 21770863 GAUUCCGGACAAUAGCGUCCGCCGGGGAAUCUGGGCGGGCAGCCCACCUCAUCG (((..(((((......)))))..((((....(((((.....)))))))))))). ( -21.10, z-score = -1.07, R) >droEre2.scaffold_4690 12885197 54 - 18748788 GACUCCGGACAGUAGCGUCCGCCGGGGAACCUGGGCGGACAGCCCACCUCGUCG (((..(((((......)))))..((((....(((((.....)))))))))))). ( -23.80, z-score = -1.19, R) >droAna3.scaffold_13334 1279015 54 - 1562580 GACUCCGGACAAUAGCGUCCUCCGGGGAAGCGAGGCGGACAGCCCACCUCGUCC ..(((((((...........)))))))..((((((.((.....)).)))))).. ( -22.40, z-score = -1.57, R) >droWil1.scaffold_181096 9608274 54 - 12416693 GAUUCGGGGCAAUAACGACCGCCCGGGAAUCUUGGCGGACAGCCCACCUCAUCG (((...((((........(((((.((....)).)))))...)))).....))). ( -16.20, z-score = -0.46, R) >droVir3.scaffold_12970 5868893 54 + 11907090 GACUCCGGGCAGAACCGUCCGCCUGGGAAUCGAGGCGGGCAAUCAACCUCGUCA (((...((......))((((((((.(....).))))))))..........))). ( -22.60, z-score = -1.78, R) >droMoj3.scaffold_6473 1179880 54 - 16943266 GACUCCGGGCAGAAGCGUCCGCCCGGGAAUCGGGGCGGGCAGUCGAUCUCGUCG ((((....((....))((((((((.(....).)))))))))))).......... ( -23.40, z-score = -0.65, R) >apiMel3.Group8 2037681 54 + 11452794 GAUUGUGGGCAAUAUCUUCCUCCUGGAUAUCUUGGUGGACAUCCAAUUUCAUCA ((...((((........(((.((.((....)).)).)))..))))...)).... ( -9.30, z-score = 0.95, R) >triCas2.chrUn_79 391 54 + 39916 GAUUCAGGACAAUAUCUUCCUCCAGGAUACCUUGGAGGACAAUUCUUUUCAUCG (((..((((....((..(((((((((....)))))))))..))))))...))). ( -15.30, z-score = -2.63, R) >consensus GAUUCCGGACAAUAGCGUCCGCCGGGGAAUCUGGGCGGACAGCCCACCUCAUCG (((...((........(((((((..(....)..)))))))......))..))). (-12.05 = -11.51 + -0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:55 2011