| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,250,253 – 9,250,381 |
| Length | 128 |
| Max. P | 0.787695 |
| Location | 9,250,253 – 9,250,381 |
|---|---|
| Length | 128 |
| Sequences | 6 |
| Columns | 134 |
| Reading direction | forward |
| Mean pairwise identity | 70.98 |
| Shannon entropy | 0.54847 |
| G+C content | 0.43719 |
| Mean single sequence MFE | -36.61 |
| Consensus MFE | -15.00 |
| Energy contribution | -16.78 |
| Covariance contribution | 1.79 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9250253 128 + 22422827 ---CGUCGGUCGGUGGAAAAAC--AUCGAAAAACCAUCGAGCCAUCGAAGUGACAUCGUAGCAUUGUGAUAUCG-AUAUGUUGUCGAUGAUAAAGAAUCGACAAAUCGAUACUCAUCGCGCAUCGAUAUUUCGC ---.((((.(((((((......--.((((.......)))).)))))))..))))((((..((...(((((((((-((...((((((((........))))))))))))))).))))...))..))))....... ( -41.20, z-score = -2.22, R) >droEre2.scaffold_4690 12878692 125 - 18748788 ---CGUCGGUCGGUGGAAAAAC--AUCGAAAAAGCAUCGAGCCAUCGAUGGGGCAUCGUAGCAUCGGAAUAUCG-AUAC---UUCGAUGACUUAAUACCGGCAACUCGAUAUUUAUCGGACAUCGAUGUUUCGC ---.((...((((((......)--)))))....))..((((.((((((((((((((((.((.((((......))-)).)---).))))).)))....(((....)..(((....))))).)))))))).)))). ( -39.80, z-score = -2.01, R) >droYak2.chrX 17842856 125 + 21770863 ---CGUCGGUCGGUGGAAAAAC--AUCGAAAAAACAUCGAGCCAUCGAUGGGGCAUUGCAGCAUCGGAAUAUCG-AUAC---GUCGAUUACUUAAUAUCGGCAUCUCGAUAUGUAUUGAAUAUCGAUGCUUCCC ---.(((..((((((......)--))))).....((((((....)))))).))).....((((((((.((.(((-((((---((((((........))))))((....))..))))))))).)))))))).... ( -40.60, z-score = -2.50, R) >droSec1.super_15 19784 128 + 1954846 ---CGUCGGUCGGUGGAAAAAC--AUCGAAAAACCAUCGAGCCAUCGAUGGGACAUCGUAGCACCGCGAUAUCG-AUAGGUAGUCGAUGAUUAAGAAUCGGCAACUCGAUACUCAUCGCGAAUCGAUAUUUCAC ---.(((..((((((......)--)))))....(((((((....))))))))))((((......((((((((((-(...((.((((((........)))))).))))))))....)))))...))))....... ( -43.90, z-score = -2.83, R) >droSim1.chrX_random 294003 128 + 5698898 ---CGUCGGUCGGUGGAAAAAC--AUCGAAAAACCAUCGAGCCAUCGAUGGGACAUCGUAGCACCGCGAUAUCG-AUAGGUGGUCGAUGAUUAAGAAUCGGCAACUCGAUACUCAUCGCGCAUCGAUAUUUCGC ---.(((..((((((......)--)))))....(((((((....))))))))))((((......((((((((((-(...((.((((((........)))))).))))))))....)))))...))))....... ( -43.90, z-score = -1.98, R) >dp4.chrXL_group1a 1396993 128 - 9151740 UUACUUUAGUGUGACAGCAGACUUAUCGACAAAAUAU---ACCAUC---UGAACAUUAAAAAAAUAUACCAUCUCAUAUUAAAAAAAUACCGUAAAUAUACUGACGAAGUAUUCAUGUUCCAUCAAUAUUCCUC ((((((((((((.....((((................---....))---)).))))))))..(((((........)))))...........))))..(((((.....)))))...................... ( -10.25, z-score = 0.78, R) >consensus ___CGUCGGUCGGUGGAAAAAC__AUCGAAAAACCAUCGAGCCAUCGAUGGGACAUCGUAGCAUCGCAAUAUCG_AUACGU_GUCGAUGACUAAAAAUCGGCAACUCGAUACUCAUCGCGCAUCGAUAUUUCGC ....(((..(((((((.........((((.......)))).)))))))...)))...........(.(((((((........((((((........))))))....((((....)))).....))))))).).. (-15.00 = -16.78 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:54 2011