| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,718,580 – 10,718,656 |
| Length | 76 |
| Max. P | 0.867153 |
| Location | 10,718,580 – 10,718,656 |
|---|---|
| Length | 76 |
| Sequences | 7 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 65.02 |
| Shannon entropy | 0.72077 |
| G+C content | 0.33861 |
| Mean single sequence MFE | -9.49 |
| Consensus MFE | -5.07 |
| Energy contribution | -4.77 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.78 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10718580 76 + 23011544 AGUGAAAUACAUAAAACUGCCUAACCAUUUCAGAAAUUCUAAUCUGACAAAUGCAGGCACAUUACUUGAAAAACAG .................(((((...(((((((((........)))))..)))).)))))................. ( -11.60, z-score = -1.98, R) >droSim1.chr2L 10517196 76 + 22036055 AGUGAAAUAAAUAAAACUGCCUAACCAUUUCAGACAAUCUAAUCUGGCAAAUGCAGGCACAUUACUUGAAAAACAG .((....(((.(((...(((((........((((........))))((....)))))))..))).)))....)).. ( -10.80, z-score = -0.98, R) >droSec1.super_3 6136031 76 + 7220098 AGUGAAAUAAAUAAAACUGCCUAACCAUUUCAGACAUUCUAAUCUGGCAAAUGCAGGCACAUUACUUGAAAAACAG .((....(((.(((...(((((........((((........))))((....)))))))..))).)))....)).. ( -10.80, z-score = -0.87, R) >droYak2.chr2L 7121768 75 + 22324452 -GUGAAAUAAAUAAAGCUGCCUUACCAUUUUAGACAUUCUAAUCUGACAAAUGCAGGCACAUAACAUCGAAAAUAG -..............(.(((((...(((((((((........)))))..)))).))))))................ ( -9.40, z-score = -0.85, R) >droEre2.scaffold_4929 11927952 76 - 26641161 AGUGAAAAAAAUAAAGCGGCCUAACCAUUUUAGACAUUCUAAUCUGCCAAAUGCAGGCACACAACAUUGAAAACAG .(((.......(((((.((.....)).)))))..........(((((.....)))))..))).............. ( -9.80, z-score = -0.23, R) >droMoj3.scaffold_6500 13409576 59 - 32352404 -------UCCAUUAAAUCGAUUAGGUACGUUAGAUGUUUGAGCUUCAGUAUUUUAAGCACAUUAAG---------- -------...........................((((((((.........)))))))).......---------- ( -3.10, z-score = 1.50, R) >droAna3.scaffold_12916 14562976 75 + 16180835 AAACAAAAAUUUCCAUUUUCUUUACU-UUUUGGGCCAUCAAGUCUACCAUCAGCAAGCAAAUAACUUAGUUGAUGC ..........................-...(((((......))))).((((((((((.......))).))))))). ( -10.90, z-score = -0.95, R) >consensus AGUGAAAUAAAUAAAACUGCCUAACCAUUUUAGACAUUCUAAUCUGACAAAUGCAGGCACAUUACUUGAAAAACAG ..................((((.......(((((........))))).......)))).................. ( -5.07 = -4.77 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:48 2011