| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,234,224 – 9,234,291 |
| Length | 67 |
| Max. P | 0.835875 |
| Location | 9,234,224 – 9,234,291 |
|---|---|
| Length | 67 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 69.41 |
| Shannon entropy | 0.50491 |
| G+C content | 0.48963 |
| Mean single sequence MFE | -18.76 |
| Consensus MFE | -7.80 |
| Energy contribution | -7.28 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835875 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 9234224 67 - 22422827 CGUCAUCAAAUGCGGUAAAGAACCGCAGAAGGUUGAGAAC---------GAUGUGCAGAUUGAUGAUGAGCCGGAG (((((((((.((((((.....))))))(.(.((((....)---------))).).)...)))))))))........ ( -20.60, z-score = -3.35, R) >droSec1.super_68 124445 67 - 137979 CGUCAUCAAAUGCGGUAAAGAACCGCAGAAGGUUGAGAAC---------GAUGUGCAGAUUGAUGAUGAGCCGAAG (((((((((.((((((.....))))))(.(.((((....)---------))).).)...)))))))))........ ( -20.60, z-score = -3.71, R) >droYak2.chrX 17827222 67 - 21770863 UAUCAUCAAUUGCACUACAGAACCGCAGAGGGUUGAAAGC---------GAUGUGCAGAUUGAUGAUGAGCCGGAG (((((((((((((((.......((.....))((((....)---------)))))))).))))))))))........ ( -20.10, z-score = -2.79, R) >droEre2.scaffold_4690 12863063 67 + 18748788 UAUCAUUGCAUUCACUGCAGAAUCGCAAAAGGUUGAAAAC---------GAUGUGCAGAUUGAUGGUGAGCUGGGG ..((((..((((..(((((..((((..............)---------))).)))))...))))))))....... ( -12.24, z-score = 0.70, R) >droAna3.scaffold_13334 1251432 76 + 1562580 CGCCCCCGCAGGCGAACAAGACUCGAAAACAAGAGAAAACUUUCCGACAGACCCGCAGAUUGAUGUUGGGGGGAAG ((((......)))).......(((........)))....((..((((((..............))))))..))... ( -20.24, z-score = -1.00, R) >consensus CGUCAUCAAAUGCGCUAAAGAACCGCAGAAGGUUGAAAAC_________GAUGUGCAGAUUGAUGAUGAGCCGGAG ((((((((..((((......((((......)))).....((.......))...))))...))))))))........ ( -7.80 = -7.28 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:50 2011