| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,223,734 – 9,223,797 |
| Length | 63 |
| Max. P | 0.779884 |
| Location | 9,223,734 – 9,223,797 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 62.83 |
| Shannon entropy | 0.60860 |
| G+C content | 0.51892 |
| Mean single sequence MFE | -14.19 |
| Consensus MFE | -4.84 |
| Energy contribution | -6.52 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.779884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9223734 63 + 22422827 ------------UCUAUCCUGGAUAAGUCCCGAAGCAUCCUUACGCUCCACCUUCUUGUCCUGCUUUUCUGCUUU ------------........(((((((......(((........))).......))))))).((......))... ( -11.62, z-score = -2.52, R) >droAna3.scaffold_13334 1237733 74 - 1562580 UCCUCGACCAAGUCCUCCUCCGAGGUGCUUUGUUGCGACG-UACAGUACCGCCUCCACUCACACCUCCCGAUCCU ..(.((((.((((((((....)))).)))).)))).)...-.................................. ( -11.50, z-score = 0.28, R) >droYak2.chrX 17816873 63 + 21770863 ------------UCGAUCCUGCAUGGGUUCUGGAGCAUCCCUACGCUCCAGCUUCUUGUCGAGCCCUUCGACUUG ------------..(((((.....)))))(((((((........)))))))......((((((...))))))... ( -20.60, z-score = -2.21, R) >droSec1.super_68 114161 63 + 137979 ------------UCGAUCCUGGAUAAGUCCCGAAGCAUCCUUACGCUCUACCUUCUUGUCCUGCAUUUCGACUUU ------------((((....(((((((......(((........))).......)))))))......)))).... ( -13.62, z-score = -2.53, R) >droSim1.chrX 7352755 63 + 17042790 ------------UCGAUCCUGGAUAAGUCCCGAAGCAUCCUUACGCUCUACCUUCUUGUCCUGCAUUUCGACUUU ------------((((....(((((((......(((........))).......)))))))......)))).... ( -13.62, z-score = -2.53, R) >consensus ____________UCGAUCCUGGAUAAGUCCCGAAGCAUCCUUACGCUCCACCUUCUUGUCCUGCAUUUCGACUUU ............((((....(((((((......(((........))).......)))))))......)))).... ( -4.84 = -6.52 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:47 2011