| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,209,684 – 9,209,783 |
| Length | 99 |
| Max. P | 0.687666 |
| Location | 9,209,684 – 9,209,783 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 87.50 |
| Shannon entropy | 0.22781 |
| G+C content | 0.54152 |
| Mean single sequence MFE | -31.97 |
| Consensus MFE | -23.05 |
| Energy contribution | -24.47 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.687666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9209684 99 - 22422827 CGCGAGUAACUGCAUACAAGCCAGCGACCAACUGCAUAAAUAUGGCGACUGGCGGCCGACGGAAAUGGCCGUCGCGGUUGCAAGUGACAAAUAGCUGGG--- (((..((((((((......(((((((.(((............))))).)))))....(((((......)))))))))))))..))).............--- ( -37.20, z-score = -2.20, R) >droAna3.scaffold_13334 1205710 82 + 1562580 -------AAAUGCAUAC----------CAAACUGCAUAAAUAUGGCGGCU---GGACGACGGAAAUGGCCGUCGCGGUUGCAAGUGACAAAUAGCCGGCUGG -------..(((((...----------.....)))))......(.(((((---((.((((((......))))))).((((....))))...)))))).)... ( -26.10, z-score = -1.33, R) >droEre2.scaffold_4690 12838729 95 + 18748788 -GCGAGUAACUACAUACAAACCAGCGACCAACUGCAUAAAUAUGGCGACU---GGCCGACGGAAAUGGCCGUCGCGGUUGCAAGUGACAAAUAGCUGGG--- -....(((......)))...(((((...(((((((........(((....---.)))(((((......))))))))))))...((.....)).))))).--- ( -30.80, z-score = -2.16, R) >droYak2.chrX 17802269 96 - 21770863 CGCGAGUAACUACAUGCAAACCAGCGACCAACUGCAUAAAUAUGGCGACU---GGCCGACGGAAAUGGCCGUCGCGGUUGCAAGUGACAAAUAGCUGGG--- .(((.((....)).)))...(((((...(((((((........(((....---.)))(((((......))))))))))))...((.....)).))))).--- ( -33.30, z-score = -2.25, R) >droSec1.super_68 100141 96 - 137979 CGCGAGUAACUGCAUACAAGCUAGCGACCAACUGCAUAAAUAUGGCGACU---GGCCGACGGAAAUGGCCGUCGCGGUUGCAAGUGACAAAUAGCUGGG--- (((..((((((((......(((((((.(((............))))).))---))).(((((......)))))))))))))..))).............--- ( -34.00, z-score = -2.18, R) >droSim1.chrX_random 277765 91 - 5698898 CGCGAGUAACUGCAUAC-----AGCGACCAACUGCAUAAAUAUGGCGACU---GGCCGACGGAAAUGGCCGUCGCGGUUGCAAGUGACAAAUAGCUGGG--- (((..((((((((...(-----((((.(((............))))).))---)...(((((......)))))))))))))..))).............--- ( -30.40, z-score = -1.56, R) >consensus CGCGAGUAACUGCAUACAA_CCAGCGACCAACUGCAUAAAUAUGGCGACU___GGCCGACGGAAAUGGCCGUCGCGGUUGCAAGUGACAAAUAGCUGGG___ ....................(((((...(((((((........(((........)))(((((......))))))))))))...((.....)).))))).... (-23.05 = -24.47 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:47 2011