| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,207,086 – 9,207,152 |
| Length | 66 |
| Max. P | 0.901781 |
| Location | 9,207,086 – 9,207,152 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 70.86 |
| Shannon entropy | 0.44118 |
| G+C content | 0.56093 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -12.15 |
| Energy contribution | -12.90 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9207086 66 - 22422827 --UCCCUUUACGCACACAUGUCGUCAUUUGGCGGACGUGUGG-----CAGACGCAUAUUUCCGCAGGGAAAGG --(((((....((.(((((((((((....))).)))))))))-----)....((........))))))).... ( -25.50, z-score = -3.27, R) >droSim1.chrX_random 275171 62 - 5698898 --UCCCGUUACGCACACAUGUCGUCAUUUGGCGGACGUGUGG-----CAGACGCAUAUUUCCGACGGGU---- --.((((((..((.(((((((((((....))).)))))))))-----).((........)).)))))).---- ( -24.60, z-score = -2.22, R) >droSec1.super_68 98293 62 - 137979 --UCCCGUUACGCACACAUGUCGUCAUUUGGCGGACGUGUGG-----CAGACGCAUAUUUCCGCAGGGA---- --(((((((..((.(((((((((((....))).)))))))))-----).)))((........)).))))---- ( -25.10, z-score = -2.70, R) >droPer1.super_15 2030084 65 + 2181545 UCCCUUGCACCACUCACGCACUUUUGUGGCACGGACGUGUGGCAGACCAGACGCAUAUUUCCGCU-------- ......((.((((............))))...((((((.(((....))).)))......))))).-------- ( -14.50, z-score = 0.29, R) >consensus __UCCCGUUACGCACACAUGUCGUCAUUUGGCGGACGUGUGG_____CAGACGCAUAUUUCCGCAGGGA____ ...((((.......(((((((((((....))))).))))))...........((........))))))..... (-12.15 = -12.90 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:45 2011