| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,203,898 – 9,203,990 |
| Length | 92 |
| Max. P | 0.572247 |
| Location | 9,203,898 – 9,203,990 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 65.07 |
| Shannon entropy | 0.69291 |
| G+C content | 0.54562 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -10.47 |
| Energy contribution | -11.90 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9203898 92 - 22422827 -CAGGCCGUGCAUACAAAUGGGGAUUUCGGGCCAUGUGAAUGGGAGCCAAGUUCGUGGAUGGAUCUCCGUGGGUU---ACGUGCACGGGCUCAGAU -.((.((((((((((..((((((((((....(((((....(((...)))....)))))..))))))))))..)).---..)))))))).))..... ( -37.00, z-score = -2.43, R) >droSim1.chrX_random 2690683 92 - 5698898 -CAGGCCGUGCAUACAAAUGGGAAUUUCAGGCCUUGCGAAUGGGAGCCAAGUUCGUGGAUGGAUCUCCGUGGGUU---ACGUGCACGGGCUCAGAU -.((.((((((((((..(((((...((((..((..((((((.(....)..)))))))).))))..)))))..)).---..)))))))).))..... ( -31.70, z-score = -0.92, R) >droSec1.super_68 95121 92 - 137979 -CAGGCCGUGCAUACAAAUGGGGAUUUCGGGUCUUGCGAAUGGGAGCCAAGUUCGUGGAUGGAUCUCCGUGGGUU---ACGUGCACGGGCUCAGAU -.((.((((((((((..((((((((((...((((.((((((.(....)..))))))))))))))))))))..)).---..)))))))).))..... ( -36.00, z-score = -2.36, R) >droYak2.chrX 17796975 92 - 21770863 -CAAGCCGUGCAUACAAAUGGGGAUUUGGGGCUUUGUGAAUGGGCGCCAAGUUCGUGGAUGGAUCUCCGUGGAUU---ACGUGCACGGGCUCAGAU -..((((((((((........((((((((.((((.......)))).))))))))((((((((....))))...))---)))))))).))))..... ( -33.90, z-score = -1.95, R) >droEre2.scaffold_4690 12832974 77 + 18748788 -CAAGCCGUGCAUACAAAUGGGGACUUUGGACGUUGUGAA---------------UGGAUGGAUCUCCGUGGGUU---ACGUGCACGGGCUCAGAC -..((((((((((((..(((((((.(..(..(((.....)---------------))..)..))))))))..)).---..)))))).))))..... ( -26.10, z-score = -1.80, R) >droAna3.scaffold_13334 1200290 71 + 1562580 -CACCCUCUGCAUACAAAUGGGAAAUGGGAGCCAAGU---------------------UCAGGGCACUCUGGGUU---ACGUGCACGGUCUCAGAU -..((((((.(((....))))))...))).(((....---------------------....)))..((((((..---.((....))..)))))). ( -17.80, z-score = 0.46, R) >droGri2.scaffold_15203 654641 96 + 11997470 ACGAUCGUGAGAUACAUAUACGCACGUCGAUCCGCUUGUGCAGGGGCUAGGGGAGGGUGUAGCUGUGAUUACGUCGAAAUUGGCAUCAUCGUCAAU .(((.(((((..((((..(((((.......(((.((...((....)).)).)))..)))))..)))).))))))))..((((((......)))))) ( -27.00, z-score = 0.20, R) >consensus _CAAGCCGUGCAUACAAAUGGGGAUUUCGGGCCUUGUGAAUGGGAGCCAAGUUCGUGGAUGGAUCUCCGUGGGUU___ACGUGCACGGGCUCAGAU .....((((((((((..(((((((.......................................)))))))..))......))))))))........ (-10.47 = -11.90 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:44 2011