| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,182,850 – 9,182,943 |
| Length | 93 |
| Max. P | 0.991443 |
| Location | 9,182,850 – 9,182,943 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 73.15 |
| Shannon entropy | 0.51249 |
| G+C content | 0.45909 |
| Mean single sequence MFE | -31.15 |
| Consensus MFE | -19.43 |
| Energy contribution | -20.83 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.991443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9182850 93 - 22422827 UUGAAGUUGUGGGAA------GCAUUCUUUGGGCUCGCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGAGGAAGUCUUUAAUUUUC ..(((((((.((((.------...((((((((((.((((...((((((((((........))))))))))))).).)))))))))).))))))))))). ( -31.50, z-score = -2.94, R) >droSim1.chrX 7333809 93 - 17042790 UUGAAGUUGUGGGAA------GCCCUCUUUGGGCUCCCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGAGCUCGAGGAAGUCUUCAAUUUCC ..(((((((.((((.------....(((((((((((....((((((((((((........))))))))))))..)))))))))))..))))))))))). ( -35.80, z-score = -2.76, R) >droSec1.super_68 74805 93 - 137979 UUGAAGUUGUGGGAA------GCCCUCUUUGGGCUCCCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGAGGAAGUCUUCAAUUUCC ..((((((.(((((.------((((.....))))))))).((((((((((((........))))))))))))........((((....)))))))))). ( -35.10, z-score = -2.73, R) >droYak2.chrX 17775141 93 - 21770863 UUGGAGUUGUGGGAA------GCCCUCUUUGGGCUCCUAAUAAUCGGCCCUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGGGAAGGUCAACAAUUUCC ..((((((((((((.------((((.....)))))))).......(((((((....)))((.(..(((....)))..))).....)))).)))))))). ( -32.90, z-score = -1.26, R) >droEre2.scaffold_4690 12812185 98 + 18748788 UUGAAGUUGUGGGAAGU-UGUGCCUUCCUGGGGCUCUUAAUAAUCGGCAGUUGGCAAAGGAAGUGCUGUUUGCAGUGCCCGAGGAAGUCCUCAAUUUCC ...........((((((-((.(.((((((.((((.(((((....(((((.((........)).))))).))).)).)))).))))))..).)))))))) ( -36.40, z-score = -2.71, R) >droMoj3.scaffold_6482 645131 94 - 2735782 UCUAUAUUGUAGAAUGCAUAGAUAAUCAUGGGGUUCCAAGUUUUCAUCAAU---CUAUCUGAAUGAAACUUCCACUGCACUAAGCAAUAUAUUGUCU-- ..((((((((..(.((((..........(((....)))((((((..(((..---.....)))..)))))).....)))).)..))))))))......-- ( -15.20, z-score = 0.02, R) >consensus UUGAAGUUGUGGGAA______GCCCUCUUUGGGCUCCCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGAGGAAGUCUUCAAUUUCC ..(((((((.(((.........)))(((((((((......((((((((((((........))))))))))))....)))))))))......))))))). (-19.43 = -20.83 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:42 2011