| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,717,258 – 10,717,359 |
| Length | 101 |
| Max. P | 0.851791 |
| Location | 10,717,258 – 10,717,359 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.43 |
| Shannon entropy | 0.41372 |
| G+C content | 0.26616 |
| Mean single sequence MFE | -20.78 |
| Consensus MFE | -7.74 |
| Energy contribution | -8.49 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10717258 101 + 23011544 CUUCUACACAAAAAAUGAAGACUUUCGGCUUAAAUCUUAGUUUUUCAUUUAAGAUGAGUUACUAAGAACAAGAGC---AAUACAUUUUUAAGUUUAUGUUUAUU ..........(((((((..(.....).((((...(((((((..((((((...))))))..)))))))....))))---....)))))))............... ( -18.60, z-score = -1.74, R) >droEre2.scaffold_4929 11926430 101 - 26641161 CUUCUACACAAAAAAAUGGGGACUCUGGCUUAAGCUGUAGUUUU-CAUUUAAAAUGAAUUAUUGAGUG--GAAGUUCAAAUGAAUUUUCACGUUCAUUUUUAUU .............(((((..((((..(((....)))..))))..-)))))(((((((((......(((--(((((((....))))))))))))))))))).... ( -29.30, z-score = -4.85, R) >droSec1.super_3 6134694 98 + 7220098 CUUGUACACAAAAAAUGAAAACUUUGGGCUUAAAACCUAGUUUUUCAUUUAAGAUCAAUUACUAAGCGCAGAAGUUAAAAUACAUUUUCAUUUUUAAU------ ..........(((((((((((.((((.(((((.....(((((..((......))..))))).))))).)))).((......)).)))))))))))...------ ( -17.00, z-score = -2.15, R) >droSim1.chr2L 10515870 98 + 22036055 CUUGUACACAAAAAAUGAAGACUUUGGGCUUAAAUCCUAGUUUUUCAUUUAAGAUAAAUUACUAAGCGCAGAAGUUAAAAUACAUUUUCAUUUUUAAU------ ..........(((((((((((.((((.(((((.....((((((.((......)).)))))).))))).)))).((......)).)))))))))))...------ ( -18.20, z-score = -2.29, R) >consensus CUUCUACACAAAAAAUGAAGACUUUGGGCUUAAAUCCUAGUUUUUCAUUUAAGAUGAAUUACUAAGCGCAGAAGUUAAAAUACAUUUUCAUGUUUAAU______ ..........(((((((((((.....(((((......((((..((((((...))))))..)))).......)))))........)))))))))))......... ( -7.74 = -8.49 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:47 2011