| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,160,700 – 9,160,802 |
| Length | 102 |
| Max. P | 0.916693 |
| Location | 9,160,700 – 9,160,802 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.28 |
| Shannon entropy | 0.48896 |
| G+C content | 0.43121 |
| Mean single sequence MFE | -28.22 |
| Consensus MFE | -18.22 |
| Energy contribution | -18.34 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9160700 102 + 22422827 UUCCAGUUUUGUGCUGGAAAGUAGGGAAUGGACUCCGUUUGAAAUGCAACCCU---------------GGCGCAUAAGUGGGCGCAAGCGCACAUAAUUUGAUCUAGUAAAUUUAUA--- (((((((.....))))))).(((((((((((...)))))((.....)).))))---------------.))......(((.((....)).)))........................--- ( -26.60, z-score = -0.41, R) >droEre2.scaffold_4690 12792036 112 - 18748788 UUCCAGUUUCACGCUGGAAAGUAGGCAACGGACUUCGCUUGAAAUGCAACCUC---UCGAACUCAAAUGUCGCGUAAGUGUGCGCAGGCGCAACCGAAUAUAACUG--AAAUGCAUA--- (((((((.....))))))).((((....)((....((((((....(((..((.---.((.((......))..))..))..))).))))))...))...........--...)))...--- ( -26.70, z-score = 0.40, R) >droYak2.chrX 17755173 118 + 21770863 UUCCAGUUUUACGCUGGAAAGUAGGCAACGGACUUCGCUUGCAAUGCAGCCCUGCUUUAAACUCAAAUGGCGCGUAAUUGUGCGCAAGCGCAACCGAAUUUAACUG--GAAUAUAUAUAG ((((((((....(((........)))..(((....(((((((...(((....)))..............(((((....))))))))))))...))).....)))))--)))......... ( -36.40, z-score = -2.03, R) >droSec1.super_68 53096 86 + 137979 UUCCAGUUUUGCGCUGGAAAGU----------------UUGAAAUGCAACCCU---------------GUCGCAUAAGUGUACGCAAGCGCACAUGAUUUGAACUAGUAAAUAUAUA--- (((((((.....)))))))(((----------------(..((((((.((...---------------)).))))..(((..(....)..)))....))..))))............--- ( -23.80, z-score = -2.28, R) >droSim1.chrX 7316361 86 + 17042790 UUCCAGUUUUGCGCUGGAAUGU----------------UUGAAAUGCAACCCU---------------GGCGCAUAAGUGUGCGCAAGCGCACAUGAUUUAAACUAGUAAAUAUAUA--- (((((((.....))))))).((----------------(((((((((......---------------...))))..((((((....))))))....))))))).............--- ( -27.60, z-score = -2.63, R) >consensus UUCCAGUUUUGCGCUGGAAAGUAGG_AA_GGACU_CG_UUGAAAUGCAACCCU_______________GGCGCAUAAGUGUGCGCAAGCGCACAUGAUUUGAACUAGUAAAUAUAUA___ (((((((.....)))))))........................((((........................))))..((((((....))))))........................... (-18.22 = -18.34 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:39 2011