| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,145,813 – 9,145,939 |
| Length | 126 |
| Max. P | 0.773641 |
| Location | 9,145,813 – 9,145,939 |
|---|---|
| Length | 126 |
| Sequences | 6 |
| Columns | 130 |
| Reading direction | reverse |
| Mean pairwise identity | 65.78 |
| Shannon entropy | 0.63159 |
| G+C content | 0.31437 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -9.39 |
| Energy contribution | -8.78 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9145813 126 - 22422827 UUAUCGGCACAU-UUGCUGAUAAGCAAACAAGCAAAAAAUGAAUGGCUCUAGACAUAAACUAUAGUGUAAUUCCAAACAAUGCAAAAAUAAA-CGCUGAGAAGU--UUACCAUUAACGAAUGCUAAGUAA .((((((((...-.))))))))((((.....(((......((((.((.(((...........))).)).)))).......))).....((((-(........))--)))...........))))...... ( -22.02, z-score = -0.92, R) >droSim1.chrX 7299295 101 - 17042790 UUAUCGGCACAU-UUGCUGAUAAGCA---AAACAAAUUUUGAACGGC-CCAGACAUAAAAUAUAGUGUAAUUCCAAACAAUGCAAAAAUAAA-CGAUGAGAAGU--UUA--------------------- (((((((((...-.)))))))))(((---...((.....))...((.-....((((........))))....))......))).....((((-(........))--)))--------------------- ( -16.50, z-score = -1.16, R) >droSec1.super_68 33690 122 - 137979 UUAUCGGCACAU-UUGCUGAUAAGCA---AAACAAAAUUUGAACGGC-UUAUACAUAAACUAUAGUGUAAUUCCAAACAAUGCAAAAAUAAA-CGAUGAGAAGU--UUACCAUUAACGAAUGUUAAGUAA (((((((((...-.)))))))))(((---...((.....))...((.-((((((..........))))))..))......))).....((((-(........))--)))...(((((....))))).... ( -19.10, z-score = -0.79, R) >droYak2.chrX 17742041 98 - 21770863 UUAUCGACACAU-UUGUUGAUAAGCA---AAACAAAUUGGAAACGGC-CCAGACAUAAACUAUGGUGUAAUUCAAAACAAUGCAAAAAUAAC-CGCUGAGGUAA-------------------------- (((((((((...-.)))))))))(((---........((....))((-(((...........))).))............))).......((-(.....)))..-------------------------- ( -17.80, z-score = -1.07, R) >droEre2.scaffold_4690 12779254 112 + 18748788 UUAUCGGCACAU-UUGUCGAUAAGCA---AAACAAAUUGCAAAUGGC-UCAGACAUAAACUAU-GUGUAAUUCAAAACAAUGAAAAAA-AAA-CUCUAUGAAGUAACUAAUAUUAAGUAA---------- (((((((((...-.)))))))))(((---(......)))).....((-(((.(((((.....)-))))..((((......))))....-...-.....)).)))................---------- ( -17.10, z-score = -1.40, R) >droAna3.scaffold_13047 747220 123 + 1816235 UUAUCAGCUGGUGCCGUUGAUAAGCA---AAGUGUAAU---AGCUUUAUCA-AUAUCAACAAUAACGUAAUUAAUAACAAUUGAGUAAUAAAUCCUUUCCAAGAAAUCAUGGACAAAGCAAUAGGAGCAC ..........((((.(((((((...(---((((.....---.)))))....-.)))))))................................((((.((((.(....).)))).........)))))))) ( -18.60, z-score = -0.05, R) >consensus UUAUCGGCACAU_UUGCUGAUAAGCA___AAACAAAAUGUGAACGGC_CCAGACAUAAACUAUAGUGUAAUUCAAAACAAUGCAAAAAUAAA_CGCUGAGAAGU__UUA__AUUAA_GAA__________ (((((((((.....))))))))).............................((((........)))).............................................................. ( -9.39 = -8.78 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:38 2011