| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,133,004 – 9,133,106 |
| Length | 102 |
| Max. P | 0.525159 |
| Location | 9,133,004 – 9,133,106 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 68.70 |
| Shannon entropy | 0.64213 |
| G+C content | 0.57753 |
| Mean single sequence MFE | -40.01 |
| Consensus MFE | -12.98 |
| Energy contribution | -12.98 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9133004 102 - 22422827 ------------GAGGAUGCAGUUCUGCCCAUGCUUGCUAUCGACAGUCAGCCAGGUCAGUUAGUUAGCCAGGACGGGGAGGUCCGCUAUCCUAUCCGGAAUUGGCUGACACCA ------------..((........(((.((..(((.(((......))).)))..)).)))...(((((((((..(((..(((........)))..)))...))))))))).)). ( -35.40, z-score = -0.71, R) >droSec1.super_68 20693 102 - 137979 ------------GAGGAUGCAGUUCUGCCAAUGUUUGCUAUCGACAGUCAGCCAGGUCAGUUAGUUAGCCAGGAUGGGGAGGUCCGCUAUCCUAUCCGGAAUUGGCUGACACCA ------------..((..(((....)))..................((((((((((..((....))..)).((((((((.((....)).)))))))).....)))))))).)). ( -34.70, z-score = -0.98, R) >droYak2.chrX 17729141 102 - 21770863 ------------GAGGAUGCAGUUCUCCCCAUGUUGGCUGUCGACAGUCAACCAGGUCAGUUAGUUAGCCAGGAUGGGGAGGUCCGAUAUCCUAUCCGGAAUUGGCUGACACCA ------------..((.(((((.(((((((((.(((((((..(((.(.(......).).)))...))))))).))))))))).(((((.(((.....))))))))))).)))). ( -40.30, z-score = -2.27, R) >droEre2.scaffold_4690 12766378 102 + 18748788 ------------GAAGAUGCAGCUCUGCCAAUGUUGGCUAUCGACAGUCAACCAGGUCAGUUAGUUAGCCAGGAUGGGGAGGUCCGCUAUCCUAUCCGGAAUUGGCUGACACCA ------------......(((....)))....(((((((......)))))))...((((((((((...((.((((((((.((....)).)))))))))).)))))))))).... ( -36.70, z-score = -1.63, R) >droAna3.scaffold_13047 995585 114 - 1816235 GGCUCAGGGUCACAGAGUGCCGUGCUCCCAAGCCUCUCGAUCGAUAGUCAGCCGGGUCAGUUGCUGAGCCAGGACGGUGAGGUUCGCUAUCCGAUUAGAAACUGGCUGACGCCC (((....((((..((((.((..((....)).)))))).))))....(((((((((.((((...)))).)).(((..(((.....)))..)))...........)))))))))). ( -43.30, z-score = -0.66, R) >dp4.chrXL_group1e 11355391 94 + 12523060 --------------------GGUGGCCCAGCCCCUGGCCAUCGAUUGCCAGCCGGGGCAGUUGGUCAGCCAGGAUGGGGAGGUGCGGUAUCCCAUUAGGAAUUGGCUGACGCCC --------------------((((...(((((((((((.((((((((((......))))))))))..))))))...((((.........))))..........))))).)))). ( -43.90, z-score = -0.94, R) >droPer1.super_30 27452 94 - 958394 --------------------GGUGGCCCAGCCCCUGGCCAUCGAUUGCCAGCCGGGGCAGUUGGUCAGCCAGGAUGGGGAGGUGCGGUAUCCCAUUAGGAAUUGGCUGACGCCC --------------------((((...(((((((((((.((((((((((......))))))))))..))))))...((((.........))))..........))))).)))). ( -43.90, z-score = -0.94, R) >droWil1.scaffold_181096 4932542 99 + 12416693 ---------------CCGAGCGUAAGCCAGCCCCUAGCCGUUGACAGCCAGCCCGCUCAGUUGCUUAGUCAGGAUGGCGAAGUUCGGUAUCCCAUACGCAAUUGGCUAACACCC ---------------..(.((....)))......(((((((((.....))))......((((((.((....(((((.((.....)).)))))..)).)))))))))))...... ( -27.50, z-score = -0.48, R) >droVir3.scaffold_12970 7554331 105 - 11907090 --------GCUGGCUCACUUAAUGUGCCA-CCCCUGGCAAUUGAUAGUGAGCCAGCGCAGCUAGUUAGCCAGGAUGGUGAGGUGCGUUAUCCGUUACGCAAUUGGCUGACGCCC --------(((((((((((.....(((((-....)))))......)))))))))))((((((((((.((..((((..((.....))..)))).....))))))))))).).... ( -49.10, z-score = -4.31, R) >droMoj3.scaffold_6482 569233 105 + 2735782 --------UGCGGUUCAUUGGAUGCUCCA-CCGCUGGAUAUCGACAGUGAACCAGCUAAACUGGUUAGCCAGGAUGGUGAGGUGCGCUAUCCCCUGCGUAGUUGGCUGACACCA --------.(((((((((((((((.((((-....))))))))..))))))))).)).......((((((((((((((((.....))))))))..........)))))))).... ( -41.10, z-score = -2.01, R) >droGri2.scaffold_15203 4939131 105 + 11997470 --------GGUGGCUCACUGGAUGUGCCA-CCAUUGGCCAUUGAAAGUGAACCGACACAGCUGGUUAGCCAGGAUGGCGAGGUCCGUUAUCCGUUGCGCAAUUGGCUGACACCC --------(((((.(((((.((((.((((-....))))))))...))))).))....((((..(((.((..((((((((.....))))))))...))..)))..))))..))). ( -44.20, z-score = -2.61, R) >consensus ____________GAGCAUGCAGUGCUCCA_CCCCUGGCUAUCGACAGUCAGCCAGGUCAGUUGGUUAGCCAGGAUGGGGAGGUCCGCUAUCCCAUCCGGAAUUGGCUGACACCC ...............................................................(((((((((........((........)).........))))))))).... (-12.98 = -12.98 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:37 2011