| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,120,210 – 9,120,300 |
| Length | 90 |
| Max. P | 0.565283 |
| Location | 9,120,210 – 9,120,300 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.60 |
| Shannon entropy | 0.37373 |
| G+C content | 0.65370 |
| Mean single sequence MFE | -43.72 |
| Consensus MFE | -24.36 |
| Energy contribution | -25.20 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9120210 90 - 22422827 ------GAUUCCUGCGGAGCUUCGAGAGUGUACGCUGGCGCUCUGGUUUGCUUGGAGCUCCGC------------------------UGGGCCUGACCGUGGCUGGGCGGGAUGUAGGCG ------....((.((((((((((((((((((......)))))))((....)))))))))))))------------------------.))(((((.((((......))))....))))). ( -43.60, z-score = -2.24, R) >droAna3.scaffold_13047 984450 120 - 1816235 GAGGAGGACUCCUCGGGGGCCUCCAACGUGUAGGCAGGCGCCCGGUUCGCCUUGGAGCCGCGUCCCCCGGAGUGGCCAGAGUGGGAGUGGCCGUGACUGUGGCUGGAUGGGAUGUAGGCG (((((....)))))(((.((((((........)).)))).)))....(((((.....((.(((((.(((.((((((((.........)))))...))).)))..)))))))....))))) ( -54.60, z-score = 0.08, R) >droEre2.scaffold_4690 12752453 90 + 18748788 ------GAUUCCUGUGGAGCUUCGAGGGUGUAGGCUGGUGGCCUAGAUUGCUUGGAGUUCCGC------------------------UGGGCUUGACCGUGGCUGGACGGGAUGUAGGCG ------....((.((((((((((((((((.(((((.....))))).))).)))))))))))))------------------------.))(((((.((((......))))....))))). ( -43.20, z-score = -3.95, R) >droYak2.chrX 17717108 90 - 21770863 ------GAUUCUUGCGGAGCUUCGAGUGUGUAGGCUGGUGCCCUGGUUUGCUUGGAGUUCCGC------------------------UGGGCGUGACCGUGGCUGGGCGGAAUGUAGGCG ------....((.(((((((((((((((..(.(((....)))...)..)))))))))))))))------------------------.))((.((.((((......))))....)).)). ( -35.90, z-score = -1.17, R) >droSec1.super_68 8299 90 - 137979 ------GACUCCUGCGGAGCUUCGAGAGUGUACGCUGGCGCUCUGGUUUGCUUGGAGCUCCGC------------------------UGGGCCUGACCGUGGCUGGGCGGGAUGUAGGCG ------....((.((((((((((((((((((......)))))))((....)))))))))))))------------------------.))(((((.((((......))))....))))). ( -43.60, z-score = -1.97, R) >droSim1.chrX 7278083 90 - 17042790 ------GAUUCCUGUGGAGCCUCCAGGGUGUACGCUGGCGCUCUGGUUUGCUUGGAGCUCCGC------------------------UGGGCCUGACCGUGGCUGGGCGGGAUGUAGGCG ------....((.((((((((((((((((((......))))))))).......)).)))))))------------------------.))(((((.((((......))))....))))). ( -41.41, z-score = -1.10, R) >consensus ______GAUUCCUGCGGAGCUUCGAGAGUGUACGCUGGCGCCCUGGUUUGCUUGGAGCUCCGC________________________UGGGCCUGACCGUGGCUGGGCGGGAUGUAGGCG .............((((((((((((((((((......)))))))........)))))))))))...........................(((((.((((......))))....))))). (-24.36 = -25.20 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:35 2011