| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,074,311 – 9,074,403 |
| Length | 92 |
| Max. P | 0.631886 |
| Location | 9,074,311 – 9,074,403 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 81.91 |
| Shannon entropy | 0.34982 |
| G+C content | 0.36848 |
| Mean single sequence MFE | -17.43 |
| Consensus MFE | -11.89 |
| Energy contribution | -12.58 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9074311 92 + 22422827 --AGGAAAACAUUUUUGGGGUCGAGUGCAGGAACACA---ACAAUAUUUUUGGGCACCAAAUAUACAGUCAACUUAUUGUAUUGCAUUACGAU-UACG --..............(..(((((((((((.......---........(((((...)))))..((((((......))))))))))))).))))-..). ( -18.00, z-score = -1.75, R) >droSec1.super_34 433387 92 + 457129 --AGGGAAACAUUUUUGGGGUCGAGUGCAGGAACACA---ACAAUAUUUUUGGGCACCAAAUAUACAGUCAACUUAUUGUAUUGCAUUACGAU-UACG --..(....)......(..(((((((((((.......---........(((((...)))))..((((((......))))))))))))).))))-..). ( -19.50, z-score = -2.25, R) >droYak2.chrX 9528548 92 - 21770863 --AGGGAAACAUUUUUGGGGUCGAGUGCAGGAACACA---ACAAUAUUUUUGGGCACCAAAUAUACAGUCAACUUAUUGUAUUGCAUUACGAU-UACG --..(....)......(..(((((((((((.......---........(((((...)))))..((((((......))))))))))))).))))-..). ( -19.50, z-score = -2.25, R) >droEre2.scaffold_4690 12705005 93 - 18748788 AAUGGGAUACAUUUU-GGGGUCGAGUGCAGGAACACA---ACAAUAUUUUUGGGCACCAAAUAUACAGUCAACUUAUUGUAUUGCAUUACGAU-UACG ((((.....))))..-(..(((((((((((.......---........(((((...)))))..((((((......))))))))))))).))))-..). ( -18.50, z-score = -1.53, R) >droAna3.scaffold_13248 1371181 96 - 4840945 --AAGAACUUGUUUGGGGCGUCGAGUGCAGGAACACAGCAACAAUAUUUUUGGGCACCAAAUAUACAGUCAACUUAUUGUAUUGCAUUACGAUAUAUA --..((...(((((((.((.....(((......))).....(((.....))).)).))))))).....))....(((((((......))))))).... ( -17.90, z-score = -0.23, R) >droPer1.super_14 1957411 79 - 2168203 ---------------ACAAACACAGUCAACCAAGACAGCAACAAUAUUUUUGGGCACCAAAUAUACAGUCAACUAAUUGUAUUGCAUUAUGAUA---- ---------------.........(((......))).((((.......(((((...)))))..((((((......)))))))))).........---- ( -11.20, z-score = -0.87, R) >consensus __AGGGAAACAUUUUUGGGGUCGAGUGCAGGAACACA___ACAAUAUUUUUGGGCACCAAAUAUACAGUCAACUUAUUGUAUUGCAUUACGAU_UACG ...................((((((((((...................(((((...))))).(((((((......))))))))))))).))))..... (-11.89 = -12.58 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:31 2011