| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,709,472 – 10,709,568 |
| Length | 96 |
| Max. P | 0.892743 |
| Location | 10,709,472 – 10,709,568 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 87.82 |
| Shannon entropy | 0.23337 |
| G+C content | 0.40559 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -17.00 |
| Energy contribution | -17.83 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10709472 96 + 23011544 AAGAGAAAUGAGCCAUCUGGCCGAGAUAAAUGCCA-AGUGUGAAUUGAAACUCAAAGUCGCUCAUGUGAAUGAGUUUCUAAUUAAGCCAGGCAAACU ........((.(((....))))).......((((.-.((...((((((((((((...((((....)))).)))))))).))))..))..)))).... ( -27.50, z-score = -3.22, R) >droSim1.chr2L 10508044 96 + 22036055 AAGAGAAAUGAGCCAUCUGGCCGAGAUAAAUGCCA-AGUGUGAAUUGAAACUCAAAGUCGCUCGUGUGAAUGAGUUUCUAAUUAAGCCAGGCAAACU ........((.(((....))))).......((((.-.((...((((((((((((...((((....)))).)))))))).))))..))..)))).... ( -27.50, z-score = -3.16, R) >droSec1.super_3 6126786 96 + 7220098 AAGAGAAAUGAGCCAUCUGGCCGAGAUAAAUGCCA-AGUGUGAAUUGAAACUCAAAGUCGCUCGUGUGAAUGAGUUUCUAAUUAAGCCAGGCAAACU ........((.(((....))))).......((((.-.((...((((((((((((...((((....)))).)))))))).))))..))..)))).... ( -27.50, z-score = -3.16, R) >droYak2.chr2L 7112544 96 + 22324452 AAGAGAAAUGAGCCAUCUGGCCGAGAUUAUUGCCA-AGUGUGAAUGGAAACUCAAAGUCGCUCAUGUGAAUGAGUUUCUAAUUAAGCCUGGCAAACU ........((.(((....)))))......((((((-.((.(((.((((((((((...((((....)))).)))))))))).))).)).))))))... ( -32.90, z-score = -4.38, R) >droEre2.scaffold_4929 11918632 96 - 26641161 AAGAGAAAUGAGCCAUCUGGCCGAGAUUAAUGCCA-ACUGUGAAUUGAAACUCAAAGUCUCUCAUGUGAAUGAGUUUCUAAUUAAGCCAGGCAAACU ........((.(((....))))).......((((.-.((...((((((((((((...((.(....).)).)))))))).)))).))...)))).... ( -22.00, z-score = -1.30, R) >droAna3.scaffold_12916 14552597 97 + 16180835 AAGUAAAAUAAGUCAACUGCCAGAGAUAAAGGCCAGAGCUUCAAUUGUAUCUCAAAGUCGUUCAUGUGGUUGGAAUCGUAAUUAAGACAGUCAAGUC ...........(((....(((.........)))..((..((((((..(((..(......)...)))..)))))).))........)))......... ( -14.20, z-score = 0.27, R) >consensus AAGAGAAAUGAGCCAUCUGGCCGAGAUAAAUGCCA_AGUGUGAAUUGAAACUCAAAGUCGCUCAUGUGAAUGAGUUUCUAAUUAAGCCAGGCAAACU ...........(((....))).........((((...((...((((((((((((...((((....)))).)))))))).))))..))..)))).... (-17.00 = -17.83 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:46 2011