| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,026,278 – 9,026,375 |
| Length | 97 |
| Max. P | 0.527343 |
| Location | 9,026,278 – 9,026,375 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 84.90 |
| Shannon entropy | 0.26083 |
| G+C content | 0.39217 |
| Mean single sequence MFE | -19.59 |
| Consensus MFE | -12.87 |
| Energy contribution | -13.79 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9026278 97 + 22422827 CAAAGUCACUGCACAACACUUGGCCAUAAGUUAUUCCCAUUUGGAUUCCCCUUCUCAAUUGUUUCAGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGU ..((((((((((..((((.((((....(((....(((.....))).....))).)))).))))...((....))))))))))))............. ( -17.80, z-score = -1.17, R) >droSim1.chrX_random 2658815 97 + 5698898 CGAAGUCACUGCAUAACACUUGGCCAUAAGUUAUCCCCAUUUGGAUUCACCUUCCCAAUUGUUUCUGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGU .(((((((((((..((((.((((.........((((......))))........)))).))))...((....)))))))))))))............ ( -25.63, z-score = -3.52, R) >droSec1.super_34 386522 97 + 457129 CGAAGUCACUGCAUAACACUUGGCCACAAGUUAUCCCCAUUUGGAUUCACCUUCUCAAUUGUUUCUGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGU .(((((((((((.....(((((....))))).((((......))))............................)))))))))))............ ( -23.80, z-score = -2.72, R) >droYak2.chrX 9480924 94 - 21770863 -CAAGUCACUGCAUAAUAGUGCGCUAUAAGUUAUCCCCUUUUGA--UUCCAUUCUGAAUUGUUUCUGAUUUUUCGCGGUGAUUUCUCAAAGUUCUUU -.((((((((((...((((....))))...............((--(((......)))))..............))))))))))............. ( -16.90, z-score = -1.38, R) >droEre2.scaffold_4690 12657063 94 - 18748788 -CAAGUCAUUGCAUAAUACGUGGUUAUAAGUUAUCCCCCCUUGA--UUCCCUUUUGAAUUGUUUCCGAUUUUUCGCGGUGAUUUCUCAAAGUUCUUU -.((((((((((.........((..((((.(((...........--........))).))))..))((....))))))))))))............. ( -13.81, z-score = -0.53, R) >consensus CCAAGUCACUGCAUAACACUUGGCCAUAAGUUAUCCCCAUUUGGAUUCCCCUUCUCAAUUGUUUCUGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGU ..((((((((((..((((.((((.........((((......))))........)))).))))...((....))))))))))))............. (-12.87 = -13.79 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:26 2011