| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,022,776 – 9,022,829 |
| Length | 53 |
| Max. P | 0.882819 |
| Location | 9,022,776 – 9,022,829 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 96.20 |
| Shannon entropy | 0.05198 |
| G+C content | 0.52866 |
| Mean single sequence MFE | -15.10 |
| Consensus MFE | -14.23 |
| Energy contribution | -14.23 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.882819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9022776 53 - 22422827 UGGCAGUGGCUUAAGGUUGCCAAGGAGGAGCGAUUGAGCCAGCGAGAUAGUAA ..((..((((((((.(((.((.....)))))..)))))))))).......... ( -15.20, z-score = -1.81, R) >droSec1.super_34 382997 52 - 457129 UGGCAGUGGCUUAAGGUUGCCAAGG-AGAGCGAUUGAGCCAGCGAGAUAGUAU ..((..(((((((..(((((.....-...)))))))))))))).......... ( -14.10, z-score = -1.57, R) >droSim1.chrX_random 2654735 52 - 5698898 UGGCAGUGGCUUAAGGUUGCCAAGG-GGAGCGAUUGAGCCAGCGAGAUAGUAU ..((..((((((((.(((.((...)-).)))..)))))))))).......... ( -16.00, z-score = -2.02, R) >consensus UGGCAGUGGCUUAAGGUUGCCAAGG_GGAGCGAUUGAGCCAGCGAGAUAGUAU ..((..(((((((..((((((......).)))))))))))))).......... (-14.23 = -14.23 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:24 2011