| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,022,499 – 9,022,610 |
| Length | 111 |
| Max. P | 0.554791 |
| Location | 9,022,499 – 9,022,610 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 70.63 |
| Shannon entropy | 0.53488 |
| G+C content | 0.33617 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -10.31 |
| Energy contribution | -10.18 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9022499 111 - 22422827 ACCCUAUGAGUUAAAGUUGCUCA---CGAAGCUAGUCGAAUGUCAAUUAAGCGAUUAUAAUAGGUUGCUUAUUGUGAUAAGGCUUA-AUUUGACAC-AUGUUCAU-GUUAAACAAAC ......(((((.......)))))---(((......)))...(((((((((((.(((((((((((...)))))))))))...)))))-).)))))((-((....))-))......... ( -25.50, z-score = -1.68, R) >droSim1.chrX_random 2654486 104 - 5698898 ------UGAG-UACAGGUGCUCA---CGAAGCUCGUCGAAUGUCAAUUAAGCGAUUAUAAUAGGUUGCUUAUUUUGAUAAGGCUUA-AUUUGACAC-AUGUUCAU-GUUAAACAAAC ------((((-((....))))))---........(((...((((((.(((((((((......)))))))))..)))))).)))...-.(((((((.-.......)-))))))..... ( -24.90, z-score = -1.68, R) >droSec1.super_34 382741 104 - 457129 ------UGAG-UAGAGGUGCUCA---CGAAGCUCGUCGAAUGUCAAUUAAGCGAUUAUAAUAGGUUGCUUAUUUGGAUAAGGCUUA-AUUCGACAC-AUGUUCAU-GUUAAACAAAC ------((((-((....))))))---........(((((((.((((.(((((((((......))))))))).))))..........-)))))))((-((....))-))......... ( -24.90, z-score = -1.50, R) >droYak2.chrX 9477000 103 + 21770863 -------GAC-UUAAAGAUUUCA---CGAAGGUAGCCCAAUAUCAAUUAAGCGAUUAUAAUAGGUUGCCUAUUUUGAUAAGGUUUA-AUUUGACAC-GUGUUCAU-GUUAAACAAAC -------..(-(((......(((---.((((((((((....(((........))).......)))))))).)).)))))))(((((-((.((((..-..).))).-))))))).... ( -19.20, z-score = -1.24, R) >droEre2.scaffold_4690 12653174 110 + 18748788 ACCUUGUGAC-CCAAGGUGUUCA---CGAAGGUAGUCGAAUGUCAAUUAAGCGAUUUUAAUAGGUUGUUUAUUUUGAUAAGGUUUA-AUUUGACAC-AUGUUCAU-GUUAAACAAAC ((((((((((-(....).).)))---).))))).......((((((.((((((((((....))))))))))..))))))..(((((-((.((((..-..).))).-))))))).... ( -27.00, z-score = -2.07, R) >droVir3.scaffold_12963 13720261 101 + 20206255 --------------GAUUAUUUAAAUAGAAAUUAGUUCAAGGUUGAGCAAUUUGCAAGCAACAGAAAGUCACAUAAGUAUAGUAUAUAUUAGGCUCUAUAUAUACGGUUAAGCAA-- --------------((((.(((.....(((.....)))...((((.((.....))...))))))).))))...........((((((((........))))))))..........-- ( -13.50, z-score = 0.17, R) >consensus ______UGAG_UAAAGGUGCUCA___CGAAGCUAGUCGAAUGUCAAUUAAGCGAUUAUAAUAGGUUGCUUAUUUUGAUAAGGCUUA_AUUUGACAC_AUGUUCAU_GUUAAACAAAC ..................................(((((((((((..(((((((((......)))))))))...)))).........)))))))....................... (-10.31 = -10.18 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:23 2011