| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,002,428 – 9,002,498 |
| Length | 70 |
| Max. P | 0.764021 |
| Location | 9,002,428 – 9,002,498 |
|---|---|
| Length | 70 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 79.35 |
| Shannon entropy | 0.38796 |
| G+C content | 0.51771 |
| Mean single sequence MFE | -21.26 |
| Consensus MFE | -11.98 |
| Energy contribution | -12.35 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9002428 70 + 22422827 -UUCGAGGUCCACCAAAAUCGGGAGAGUCGCU-UCUU--UAUCUAACAGCACUGCACUCGUAGUACACCUCGAU -.(((((((...........(((((.....))-))).--.........(.(((((....))))).)))))))). ( -17.50, z-score = -1.79, R) >droAna3.scaffold_13047 812841 71 + 1816235 UCUGGGUUUCCGUACCAGGCGGGAGAGUGCCGUGCUUGCUAUCUAAAAGUGCUGCGCUCCCUUAAUGGCCA--- ....(((......))).((((((.((((((.(..(((.........)))..).))))))))).....))).--- ( -25.90, z-score = -1.25, R) >droEre2.scaffold_4690 12633521 70 - 18748788 -UUCGAGGUCCACCGAAAUGGGGAGAGUUGCG-GCUU--UAUCUAACAGCACUGCACUCGUACUACACCUCGAU -.(((((((((.((.....)))))((((.(((-(...--............))))))))........)))))). ( -21.86, z-score = -2.17, R) >droYak2.chrX 9456654 70 - 21770863 -UUCGAGGUCCACGAAAGUCGGGAGAGUUGCG-GCUU--UAUCUAACAGCACUGCACUCGCACUACACCUCGAU -.(((((((((((....)).))..((((.(((-(...--............)))))))).......))))))). ( -23.16, z-score = -2.53, R) >droSec1.super_34 362854 70 + 457129 -UUCGAGGUCCACCAAAAUCGGGAGAGUCGCG-GAUU--UAUCUAACAGCACUGCACUCGUAGUACACCUCGAU -.(((((((...((......))..((((.(((-(...--............)))))))).......))))))). ( -19.56, z-score = -1.87, R) >droSim1.chrX 7177179 70 + 17042790 -UUCGAGGUCCACCAAAAUCGGGAGAGUCGCG-GCUU--UAUCUAACAGCACUGCACUCGUAGUACACCUCGAU -.(((((((...((......))..((((.(((-(...--............)))))))).......))))))). ( -19.56, z-score = -1.75, R) >consensus _UUCGAGGUCCACCAAAAUCGGGAGAGUCGCG_GCUU__UAUCUAACAGCACUGCACUCGUAGUACACCUCGAU ..(((((((((..........)))((((.((..(((...........)))...))))))........)))))). (-11.98 = -12.35 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:19 2011