| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,953,904 – 8,954,003 |
| Length | 99 |
| Max. P | 0.799180 |
| Location | 8,953,904 – 8,954,003 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.69 |
| Shannon entropy | 0.35949 |
| G+C content | 0.43176 |
| Mean single sequence MFE | -28.64 |
| Consensus MFE | -19.24 |
| Energy contribution | -19.04 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8953904 99 - 22422827 ----------UAUAUAUGUACAUAUGUACUUAAU---GUUGCUCCAUGGGAAACCGAUGUCGAUGGUUUUGCUAUUGUACAAACAGCACUUAUCUGCCGAUAACUGGAGCAA ----------.......((((....)))).....---.(((((((((((....))).(((((..((...((((.((.....)).)))).....))..)))))..)))))))) ( -28.70, z-score = -2.80, R) >droSim1.chrX 7141441 90 - 17042790 ------------------UAUGUAUGCACUUACU---GUUGCUCCAUGGGAAACCGAUGUCG-UUGCUUGGCCAUUGUACAAACAGCACUUAUCUGCCGAUAACUGGAGCAA ------------------...(((......))).---.(((((((((((....))).....(-(((.(((((....((.(.....).))......))))))))))))))))) ( -23.90, z-score = -0.97, R) >droSec1.super_34 315928 90 - 457129 ------------------UAUGUAUGCACUUAUU---GUUGCUCCAUGGGAAACCGAUGUCG-UUGCUUGGCCAUUGUACAAACAGCACUUAUCUGCCGAUAACUGGAGCAA ------------------................---.(((((((((((....))).....(-(((.(((((....((.(.....).))......))))))))))))))))) ( -23.50, z-score = -0.80, R) >droYak2.chrX 9411204 111 + 21770863 UAUACACUCGUACAUAGUUAUGUGUGUACUUACUGGCGGCGUUCCAUGGGAAACCAAUGUCGCUGGCUU-GCUAUUGUACAAACAGCACUUAUCUGCCGAUAACUGGAGCAA ..(((((.((((......)))).)))))....(..(((((((....(((....))))))))))..)..(-(((.((((....))))((.(((((....))))).)).)))). ( -33.20, z-score = -1.52, R) >droEre2.scaffold_4690 12588016 106 + 18748788 --UAUAUAUGUAUGUAUGUCUGUGAGUACUUACU---GGCGUUCCAUGGGAAACCGAUGUCGGUGGGUU-GCUAUUGUACAAACAUCACUUAUCUGCCGAUAACUGGAGCAA --...............(((.((((....)))).---)))(((((((((....))).((((((..(((.-.....(((....)))......)))..))))))..)))))).. ( -33.90, z-score = -2.38, R) >consensus __________UA__UA__UAUGUAUGUACUUACU___GUUGCUCCAUGGGAAACCGAUGUCG_UGGCUU_GCUAUUGUACAAACAGCACUUAUCUGCCGAUAACUGGAGCAA ........................................(((((((((....))).(((((.............(((....)))(((......))))))))..)))))).. (-19.24 = -19.04 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:15 2011