| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,709,017 – 10,709,103 |
| Length | 86 |
| Max. P | 0.967417 |
| Location | 10,709,017 – 10,709,103 |
|---|---|
| Length | 86 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 76.50 |
| Shannon entropy | 0.42518 |
| G+C content | 0.51445 |
| Mean single sequence MFE | -32.59 |
| Consensus MFE | -17.89 |
| Energy contribution | -19.86 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967417 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 10709017 86 - 23011544 ---------------UUUGCCCU--CCUUGCUGC-GCCGGGCCAAUGGAAUUUUCCUUGGCUCGGACAACGGCAACGUGGAAAUUUGCUGGCAGAACUUGCUUU- ---------------((((((..--..((((((.-.(((((((((.(((....))))))))))))....)))))).(..(....)..).)))))).........- ( -33.10, z-score = -2.43, R) >droSim1.chr2L 10507604 85 - 22036055 ---------------UUUGCCCU--UGUUGCUGC-GCCGGGCCAAUGGAAUUUUCCUUGGCUCGGAC-AAGGCAACGUGGAAAUUUGCUGGCAGAACUUGCUUU- ---------------((((((..--.((((((..-.(((((((((.(((....))))))))))))..-..))))))(..(....)..).)))))).........- ( -36.20, z-score = -3.27, R) >droSec1.super_3 6126345 85 - 7220098 ---------------UUUGCCCU--UGUUGCUGC-GCCGGGCCAAUGGAAUUUUCCUUGGCUCGGAC-AAGGCAACGUGGAAAUUUGCUGGCAGAACUUGCUUU- ---------------((((((..--.((((((..-.(((((((((.(((....))))))))))))..-..))))))(..(....)..).)))))).........- ( -36.20, z-score = -3.27, R) >droYak2.chr2L 7112081 85 - 22324452 ---------------UUUGCCCU--UGUUGCAGC-GCCGGGCCAAUGGAAUUUUCCUUGGCUCGGAC-ACGGCAACGUGGAAAUUUGCUGGCAGAACUUGCUUU- ---------------...((...--..(((((((-.(((((((((.(((....)))))))))))).(-(((....)))).......))).)))).....))...- ( -36.30, z-score = -3.22, R) >droEre2.scaffold_4929 11918170 85 + 26641161 ---------------UUCGCCCU--UGUUGCUGC-GCCGGGCCAAUGGAAUUUUCCUUGGCUCGGAC-ACGGUAACGUGGAAAUUUGCUGGCAGAACUUGCUUU- ---------------...((((.--((((((((.-((((((((((.(((....)))))))))))).)-.)))))))).))...((((....))))....))...- ( -35.30, z-score = -3.37, R) >droAna3.scaffold_12916 14552112 85 - 16180835 ---------------UUUGCCCU--UGUUGCUGCUGCCAGGACAUUGGAAAUUUCCUCGCCUCGGACCCUGGUAG-GUGGAAAUUUCCAGUUAGUAGUUGUUU-- ---------------........--....(((((((.......(((((((((((((..((((...((....))))-)))))))))))))))))))))).....-- ( -25.51, z-score = -1.29, R) >dp4.chr4_group4 2915135 98 - 6586962 UUUGCCCUUCUUGCUACUGCUGUGCUGCUGCUGCUGGUAGGCCAGU-AAACACUUCUCGGUUGGGCC-GCGGAAAGGUGGAAAUUUA-----AAAACUUUCUUCU ((..((.((((.((((((((...((....)).)).))))((((...-.(((........))).))))-)))))).))..))......-----............. ( -25.50, z-score = 0.43, R) >consensus _______________UUUGCCCU__UGUUGCUGC_GCCGGGCCAAUGGAAUUUUCCUUGGCUCGGAC_ACGGCAACGUGGAAAUUUGCUGGCAGAACUUGCUUU_ ...............((((((......((((((...(((((((((.(((....))))))))))))....)))))).((....)).....)))))).......... (-17.89 = -19.86 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:46 2011