| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,921,201 – 8,921,258 |
| Length | 57 |
| Max. P | 0.500000 |
| Location | 8,921,201 – 8,921,258 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 97.89 |
| Shannon entropy | 0.03800 |
| G+C content | 0.47368 |
| Mean single sequence MFE | -11.65 |
| Consensus MFE | -9.83 |
| Energy contribution | -9.83 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 8921201 57 + 22422827 UAACACCAAUCCACACCGACUGCGGCAACUAAUGAAUUCUUCAGCUGCGGUCAAAAU .................(((((((((.................)))))))))..... ( -14.83, z-score = -3.71, R) >droSim1.chrX 7111780 57 + 17042790 UAACACCAAUCCACACCGCCUGCGGCAACUAAUGAAUUCUUCAGCUGCGGUCAAAAU ..............(((((..(((....)...(((.....))))).)))))...... ( -11.20, z-score = -1.68, R) >droSec1.super_34 283569 57 + 457129 UAACACCAAUCCACACCGCCUGCGGCAACUAAUGAAUUCUUCAGCUGCGGUCAAAAU ..............(((((..(((....)...(((.....))))).)))))...... ( -11.20, z-score = -1.68, R) >droEre2.scaffold_4690 12556126 57 - 18748788 UAACACCAAUCGACACCGCCUGCGGCACCUAAUGAAUUCUUCAGCUGCGGUCAAAAU .................(.(((((((.................))))))).)..... ( -9.83, z-score = -0.66, R) >droYak2.chrX 9379184 57 - 21770863 UAACACCAAUCCACACCGCCUGCGGCAACUAAUGAAUUCUUCAGCUGCGGUCAAAAU ..............(((((..(((....)...(((.....))))).)))))...... ( -11.20, z-score = -1.68, R) >consensus UAACACCAAUCCACACCGCCUGCGGCAACUAAUGAAUUCUUCAGCUGCGGUCAAAAU .................(.(((((((.................))))))).)..... ( -9.83 = -9.83 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:14 2011