| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,920,790 – 8,920,892 |
| Length | 102 |
| Max. P | 0.508776 |
| Location | 8,920,790 – 8,920,892 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 85.62 |
| Shannon entropy | 0.24579 |
| G+C content | 0.59167 |
| Mean single sequence MFE | -39.04 |
| Consensus MFE | -25.66 |
| Energy contribution | -25.38 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8920790 102 - 22422827 CGAUGUCUCCCGAUAGAUCCAAACCGCACUGCGGAGAUCCGAAAGCCAGAGCCAUGGUUUUCCAGGAACUAAGCCGCGAUUGCGAUUGGUCGGGC-GGGGGCA---- ...((((.((((...((.((((..((((.(((((((.(((((((((((......))))))))..))).))...)))))..)))).))))))...)-)))))))---- ( -42.00, z-score = -2.16, R) >droSim1.chrX 7111385 101 - 17042790 CGAUGGCUCCCGAUGGAUCCAAACCG-ACUACGGAGAUCCGAAAGCCAGAGCCAUGGUUUUCCAGGAACUGAGCCGCGAUUGCGAUUGGUCGGGC-GGGGGCG---- .....(((((((.((....))..(((-(((((((....)))...(((((..((.(((....)))))..))).))(((....)))..))))))).)-)))))).---- ( -42.20, z-score = -1.92, R) >droSec1.super_34 283208 101 - 457129 CGAUGGCUCCCGAUGGAUCCAAACCG-ACUACGGAGAUCCGAAAGCCAGAGCCAUGGUUUUCCAGGAACUGAGCCGCGAUUGCGAUUGGUCGGGC-GGGGGCA---- .....(((((((.((....))..(((-(((((((....)))...(((((..((.(((....)))))..))).))(((....)))..))))))).)-)))))).---- ( -42.20, z-score = -1.96, R) >droEre2.scaffold_4690 12555732 91 + 18748788 ----------CAAUUGACCCAAACCG-ACUACAGAGAUCCGAAAGCCAGAGCCAUGGUUUUCCAGGAACUGAGUCGCGAUUGCGAUUGGUCGGGCUGGGGGC----- ----------.......((((..(((-(((.(((...(((((((((((......))))))))..))).)))((((((....))))))))))))..))))...----- ( -38.70, z-score = -3.81, R) >droYak2.chrX 9378799 98 + 21770863 --------CCGGAUGGAUCCAAACCG-ACUACGAAGAUCCGAAAGCCAGAGCCAUGGUUUUCCAGGAACUGAGCCGCAAUUGCGAUUGGACGGGCGGGGAGGGGGGA --------(((((....)))...((.-.((.((..(.(((((..(((((..((.(((....)))))..))).))(((....))).))))))...))))..))))... ( -30.10, z-score = 0.30, R) >consensus CGAUG_CUCCCGAUGGAUCCAAACCG_ACUACGGAGAUCCGAAAGCCAGAGCCAUGGUUUUCCAGGAACUGAGCCGCGAUUGCGAUUGGUCGGGC_GGGGGCA____ .................(((...(((.((((...((.(((((((((((......))))))))..))).))....(((....)))..)))))))....)))....... (-25.66 = -25.38 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:13 2011