Locus 13754

Sequence ID dm3.chrX
Location 8,904,134 – 8,904,228
Length 94
Max. P 0.984343
window18920

overview

Window 0

Location 8,904,134 – 8,904,228
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 95.32
Shannon entropy 0.08210
G+C content 0.50000
Mean single sequence MFE -31.68
Consensus MFE -29.66
Energy contribution -29.66
Covariance contribution 0.00
Combinations/Pair 1.07
Mean z-score -2.51
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.16
SVM RNA-class probability 0.984343
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 8904134 94 - 22422827
UGCGAAGAGACCCUGAUCCAGAUGCUGAUGUUCACCCUGACAUUUCUAUUCAGGCCGCAGGGCCUUCAGUGUCUGUGUCAAAAAGUUUUGCCAA
.((((((......(((..((((((((((((((......)))).........(((((....)))))))))))))))..))).....))))))... ( -31.10, z-score =  -2.63, R)
>droEre2.scaffold_4690 12539468 94 + 18748788
UGCAAAGAGACCCUGAUCCAGAUGCUGAUGUUCAGCCUGGCAUUUCAAUUCAGGCCCCAGGGCCUUCAGUGUCUGUGUCACAAAGUUUUGCCAA
.((((((......(((..((((((((((.((((.((((((.........))))))....))))..))))))))))..))).....))))))... ( -32.40, z-score =  -2.26, R)
>droYak2.chrX 9361847 94 + 21770863
UGCAUAGAGACCCUGAUCCAGAUGCUGAUGUUCGCCCUGGCAUUUCUAUUCAGGCCCCAGGGCAUUCAGUGUCUGUGUCAAAAAGUUUUGCCAA
.(((...((((..(((..((((((((((.....(((((((....(((....)))..)))))))..))))))))))..)))....)))))))... ( -32.70, z-score =  -2.88, R)
>droSec1.super_34 266689 94 - 457129
UGCGAAGAGACCCUGAUCCAGAUGCUGAUGUUCACCCUGGCAUUUCUAUUCAGGCCCCAGGGCCCUCAGUGUCUGUGUCAAAAAGUUUUGCCAA
.((((((......(((..((((((((((.(....((((((....(((....)))..)))))).).))))))))))..))).....))))))... ( -31.10, z-score =  -2.38, R)
>droSim1.chrX 7100576 94 - 17042790
UGCGAAGAGACCCUGAUCCAGAUGCUGAUGUUCACCCUGGCAUUUCUAUUCAGGCCCCAGGGCCCUCAGUGUCUGUGUCAAAAAGUUUUGCCAA
.((((((......(((..((((((((((.(....((((((....(((....)))..)))))).).))))))))))..))).....))))))... ( -31.10, z-score =  -2.38, R)
>consensus
UGCGAAGAGACCCUGAUCCAGAUGCUGAUGUUCACCCUGGCAUUUCUAUUCAGGCCCCAGGGCCUUCAGUGUCUGUGUCAAAAAGUUUUGCCAA
.((((((......(((..((((((((((((((......))))..........((((....)))).))))))))))..))).....))))))... (-29.66 = -29.66 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:08 2011