Locus 13753

Sequence ID	dm3.chrX
Location	8,903,729 – 8,903,793
Length	64
Max. P	0.588200

overview

Window 9

Location	8,903,729 – 8,903,793
Length	64
Sequences	3
Columns	66
Reading direction	forward
Mean pairwise identity	91.92
Shannon entropy	0.11131
G+C content	0.36237
Mean single sequence MFE	-13.03
Consensus MFE	-10.90
Energy contribution	-10.46
Covariance contribution	-0.44
Combinations/Pair	1.12
Mean z-score	-1.72
Structure conservation index	0.84
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.20
SVM RNA-class probability	0.588200
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 8903729 64 + 22422827
ACUAAGCAGUCAGAUGUUUUGUCU--UUUUUAAGAGUUUCGUUGUCGUGGAGCCUUUGUUUGUUUG
..(((((((.((((.......(((--(....))))((((((......)))))).)))).))))))) ( -10.20, z-score =  -0.57, R)
>droSim1.chrX 7100130 66 + 17042790
AUUAAGCAAUCAGAUGUUUUGCCUUGUUUUUAAGAGAUUCGUUUUCGUGGAGCCUUUGUUUGUUUG
..(((((((.((((.((((..(((((....)))).((.......)))..)))).)))).))))))) ( -14.80, z-score =  -2.54, R)
>droSec1.super_34 266244 66 + 457129
AUUAAGCAAUCAGAUGUUUUGCCUUGUUUGUAAGAGAUUCGUUUUCGUGGAGCCUUUGUUUGUUUG
..(((((((.((((.((((..(((((....)))).((.......)))..)))).)))).))))))) ( -14.10, z-score =  -2.05, R)
>consensus
AUUAAGCAAUCAGAUGUUUUGCCUUGUUUUUAAGAGAUUCGUUUUCGUGGAGCCUUUGUUUGUUUG
..(((((((.((((.((((..(........................)..)))).)))).))))))) (-10.90 = -10.46 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:07 2011