| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,899,138 – 8,899,218 |
| Length | 80 |
| Max. P | 0.524754 |
| Location | 8,899,138 – 8,899,218 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 89.42 |
| Shannon entropy | 0.20588 |
| G+C content | 0.42322 |
| Mean single sequence MFE | -19.43 |
| Consensus MFE | -14.01 |
| Energy contribution | -15.15 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524754 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8899138 80 + 22422827 GCAUACACGAAAUUAGCAUACAAAACUCGGGGGAUAUGCGAUUGUGUUCCAAAUUUGCUUUAUUCCCUGAUUGAGCUAAC ............(((((...(((...((((((((((.((((...((...))...))))..))))))))))))).))))). ( -20.70, z-score = -2.60, R) >droSim1.chrX 7095687 80 + 17042790 GCAUACACGAAAUUAGCAUACAAAACUCGGGGGAUAUGCGAUUGUGUUCCAAAUUCGCUUUAUUCCCUGAUUGAGCUAAC ............(((((...(((...((((((((((.((((...((...))...))))..))))))))))))).))))). ( -22.80, z-score = -3.29, R) >droSec1.super_34 261788 80 + 457129 GCAUACACGAAAUUAGCAUACAAAACUCGGGGGAUAUGCGAUUGUGUUCCAAAUUCGCUUUAUUCCCUGAUUGAGCUAAC ............(((((...(((...((((((((((.((((...((...))...))))..))))))))))))).))))). ( -22.80, z-score = -3.29, R) >droYak2.chrX 9357747 77 - 21770863 GCAUACACGAAAUUAGCAUACAAAACUCGGGGGAUAUGCGAUUGUGUUCCAAAUUCGCUAUAUUCCCUGAUUGAGCU--- ..............(((...(((...(((((((((((((((...((...))...)))).)))))))))))))).)))--- ( -21.40, z-score = -2.64, R) >droEre2.scaffold_4690 12534596 80 - 18748788 GCAUACACGAAAUUAGCAUACAAAACUCGGGGGCUUUGCGAUUGUGUUCCCAAUUCGAUUUAUUCCCGGAUUGAGCCAAC .........................(((((((((...........))))))((((((.........)))))))))..... ( -13.80, z-score = 0.69, R) >droAna3.scaffold_13047 722953 78 + 1816235 GCGGACAUGGAAUUAGCAUACAGGACUCGAGGGAC--GCGAUUGUGUUUCACAAUUUCUUUAUUCCCUGAUUGAGCUAAC ............(((((...((((.....(((((.--..(((((((...))))))))))))....)))).....))))). ( -15.10, z-score = -0.02, R) >consensus GCAUACACGAAAUUAGCAUACAAAACUCGGGGGAUAUGCGAUUGUGUUCCAAAUUCGCUUUAUUCCCUGAUUGAGCUAAC ............(((((...(((...(((((((((..((((.............))))...)))))))))))).))))). (-14.01 = -15.15 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:06 2011