| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,886,920 – 8,887,001 |
| Length | 81 |
| Max. P | 0.548930 |
| Location | 8,886,920 – 8,887,001 |
|---|---|
| Length | 81 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 57.03 |
| Shannon entropy | 0.74215 |
| G+C content | 0.53132 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -4.78 |
| Energy contribution | -6.40 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8886920 81 + 22422827 --------------CUUGCCUUGCACCACCCACAAAUCCUGUGAAAGUGCAAUCAGUGUGGGCGCAAUUCCGGUGUUUAUAUCCCAUACUGUUUG --------------......((((((....((((.....))))...)))))).((((((((((((.......))).......))))))))).... ( -22.51, z-score = -1.98, R) >droSim1.chrX 7083592 74 + 17042790 ------------------CCUUGCGCCACCCACAAAUCCUGUGAAAGUGCAAUCGGUGUGGGCGCAAU-CCGGUGUUUA--UCCCAUACUGUUUG ------------------..((((((....((((.....))))...)))))).((((((((((((...-...)))....--.))))))))).... ( -22.50, z-score = -1.72, R) >droYak2.chrX 9344629 92 - 21770863 CCCCCUGUCCCCCUGCCACACUGCCACACCCACAAAUCCUGUGAAAGUGCAAUCAGUGUGGGCGUAAU-CCGGUGUUUA--UCCCACACUGUUUG ..................((((..((((...........))))..))))(((.(((((((((.((((.-.......)))--)))))))))).))) ( -24.90, z-score = -2.06, R) >droEre2.scaffold_4690 12522942 74 - 18748788 ------------------CCCUGUCCCGCCCACAAAUUCUGUGUAAGUGCAAUCAGUGUGGGCGCAUU-CCGGUGUUUA--UCUCAUACCGUUUG ------------------........((((((((.....(((......))).....))))))))....-.((((((...--....)))))).... ( -22.00, z-score = -3.12, R) >droAna3.scaffold_13047 712100 71 + 1816235 ------------------CCUGCCUCCGCCCGC----CUUUUGUGGGUGCAAC--AUGCGGCGGCAACACCAAACUUUACGUUAAACACUGCCCG ------------------...(((...((((((----.....))))))((...--..)))))((((......(((.....)))......)))).. ( -20.00, z-score = -0.67, R) >dp4.chrXL_group1e 8161973 75 + 12523060 --------------GCCCGCCCCCCCUGUCCCAGGACCUAUUGAGAGUGCACC-----AGAGCACAAC-AGAGCACAAAAAAUUCAUACAAUUAG --------------((.(......((((...))))...........((((...-----...))))...-.).))..................... ( -11.00, z-score = -1.46, R) >consensus __________________CCCUGCCCCACCCACAAAUCCUGUGAAAGUGCAAUCAGUGUGGGCGCAAU_CCGGUGUUUA__UCCCAUACUGUUUG ..........................(.((((((.....(((......))).....)))))).)......((((((.........)))))).... ( -4.78 = -6.40 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:05 2011