| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,886,288 – 8,886,406 |
| Length | 118 |
| Max. P | 0.784658 |
| Location | 8,886,288 – 8,886,406 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.38 |
| Shannon entropy | 0.31129 |
| G+C content | 0.36866 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -18.50 |
| Energy contribution | -18.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8886288 118 + 22422827 AAAUGUAACUAAAGAUUGAAAUGUGCACUUCUCACCUCUGUGCUCUAGAUUAGCCAAUUAUGGAAGUUCCUUGAACUUUUUAGCCUGGCUUUAUUAAUAGAGUGUUUAAACCCACACC .....................((((.......(((.(((((..........(((((.....((((((((...)))))))).....)))))......))))))))........)))).. ( -21.15, z-score = -0.44, R) >droSec1.super_34 249254 89 + 457129 -----------------------------AAAUGUAACUGUGCUCUAGAUUAGCCAAUUAUGGAAGUUACUUGAACUUUUUGGCCUGGCUUUAUUAAUAGAGUGUUUAAACCCACACC -----------------------------....((....(..(((((....(((((.....(((((((.....))))))).....))))).......)))))..)....))....... ( -18.30, z-score = -0.98, R) >droSim1.chrX 7082644 89 + 17042790 -----------------------------AAAUGCAACUGUGCUCUAGAUUAGCCAAUUAUGGAAGUUCCAUGAACUUUUUGGCCUGGCUUUAUUAAUAGAGUGUUUAAACCCACACC -----------------------------..........(..(((((....(((((.....((((((((...)))))))).....))))).......)))))..)............. ( -19.80, z-score = -1.31, R) >consensus _____________________________AAAUGCAACUGUGCUCUAGAUUAGCCAAUUAUGGAAGUUCCUUGAACUUUUUGGCCUGGCUUUAUUAAUAGAGUGUUUAAACCCACACC .......................................(..(((((....(((((.....(((((((.....))))))).....))))).......)))))..)............. (-18.50 = -18.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:04 2011