| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,875,206 – 8,875,300 |
| Length | 94 |
| Max. P | 0.911378 |
| Location | 8,875,206 – 8,875,300 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 58.53 |
| Shannon entropy | 0.69588 |
| G+C content | 0.48483 |
| Mean single sequence MFE | -27.32 |
| Consensus MFE | -10.92 |
| Energy contribution | -11.68 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911378 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8875206 94 - 22422827 -------AGGCUGCACAUGCAUCUAGUCAUUUCAGAGGAUGCCAUGGCAACCACGCCUAAAAUGAAAACUGGCACAGGAAACUGGCUAUUAAAAAGCAUUC---------- -------.((.(((.(((((((((..((......))))))).))))))).))..(((.............))).(((....)))(((.......)))....---------- ( -27.92, z-score = -2.40, R) >droSim1.chrX 7073116 94 - 17042790 -------AGGCUGCAAAUGCACCUAGUCACUGCAGAGGAUGCCAUGGCAACCACGCCUAAAAUGGCAACUGGCACAGGAAACUGGCUAUUAAAAAGCAUCC---------- -------(((.(((....))))))......(((...((.(((....))).))..(((......)))...((((.(((....))))))).......)))...---------- ( -30.70, z-score = -1.90, R) >droSec1.super_34 239025 94 - 457129 -------AGGCUGCAAAUGCACCUAGGCACUGCAGAGGAUGCCAUGGCAACCACGCCUAAAAUGGCAACUGGCACAGGAAACUGGCUAUUAAAAAGCAUCC---------- -------...(((((..(((......))).))))).((((((............(((......)))...((((.(((....))))))).......))))))---------- ( -33.10, z-score = -2.31, R) >droEre2.scaffold_4690 12512500 91 + 18748788 -------AGACUGCACAUG-------------CAGCGGAUGCCAUGGCAACCAAGUCCAAAAUGGAAAAUGGAAAUGGAAACAGGUAGGCGAAUGGCUUUUAAAAGCAUCC -------.(.((((....)-------------))))(((((((.((.(..(((..(((.....)))...)))...((....))).))))).....((((....)))))))) ( -25.90, z-score = -1.79, R) >droAna3.scaffold_12916 2941507 97 - 16180835 AAGCCAAAGUUUGCCUGGCAGAGCACUGGACGACGAGGCGGACCUGAAUCCUGGGACCGAGAUGAAUCCUACAGCUGAGAGC-GGAAAUUAAUAAAAA------------- ........((((((((.((((....))).....).)))))))).....((((((((..........)))))..((.....))-)))............------------- ( -19.00, z-score = 1.06, R) >consensus _______AGGCUGCAAAUGCACCUAGUCACUGCAGAGGAUGCCAUGGCAACCACGCCUAAAAUGGAAACUGGCACAGGAAACUGGCUAUUAAAAAGCAUCC__________ ........((((((....)))...............((.(((....))).))..)))............((((.(((....)))))))....................... (-10.92 = -11.68 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:27:00 2011