| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,854,219 – 8,854,343 |
| Length | 124 |
| Max. P | 0.528054 |
| Location | 8,854,219 – 8,854,343 |
|---|---|
| Length | 124 |
| Sequences | 4 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 94.26 |
| Shannon entropy | 0.09213 |
| G+C content | 0.56620 |
| Mean single sequence MFE | -45.17 |
| Consensus MFE | -41.06 |
| Energy contribution | -41.13 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8854219 124 - 22422827 AUCCUUUGAGUGGCUCCUGUGGUCCUGUGUGGGCGCCUUUCUAGGUAUGGCAUUACCAUCACCACAUGCCAUGCCCACAAUGUGCAGCAGUGGGUGGCUUCCACUCCGACCACACCACACAUGU ......((.((((....(((((((...(((((((((((....))))(((((((............)))))))))))))).......(.((((((.....)))))).)))))))))))).))... ( -48.30, z-score = -1.68, R) >droSim1.chrX 7052481 120 - 17042790 AUCCUUUGAGUGGCUCCUGCGGUCCUGUGUGGGCGCCUUUCUAGGUAUGGCAUUACCAUCACCACAUGCCAUGCCCACAAUGUGCAGCAGUGGGCGGCUUCCUCCCCGA----ACCACACAUGU .........(((((((((((.(..(..(((((((((((....))))(((((((............))))))))))))))..)..).)))).))))((.(((......))----))).))).... ( -45.40, z-score = -1.40, R) >droSec1.super_34 216908 120 - 457129 AUCCUUUGAGUGGCUCCUGCGGUCCUGUGUGGGCGCCUUUCCAGGUAUGGCAUUACCAUCACCACAUGCCAUGCCCACAAUGUGCAGCAGUGGGCGGCUUCCUCCCCGA----ACCACACAUGU .........(((((((((((.(..(..(((((((((((....))))(((((((............))))))))))))))..)..).)))).))))((.(((......))----))).))).... ( -44.70, z-score = -1.05, R) >droEre2.scaffold_4690 12491216 120 + 18748788 AUCCUUUGAGUGGCUCCUGCGGUCCUGUGUGGGCGCCUUUCUAGGUUUGGCAUUACCAUCACCACAUGCCAUACCCACAAUGUGCAGCAGUGGGUGGCUUCUCACCCGA----ACCACACAUGU ......((.((((.((((((.(..(..((((((.((((....)))).((((((............))))))..))))))..)..).)))).((((((....))))))))----.)))).))... ( -42.30, z-score = -1.00, R) >consensus AUCCUUUGAGUGGCUCCUGCGGUCCUGUGUGGGCGCCUUUCUAGGUAUGGCAUUACCAUCACCACAUGCCAUGCCCACAAUGUGCAGCAGUGGGCGGCUUCCUCCCCGA____ACCACACAUGU .......((((.((((((((.(..(..(((((((((((....))))(((((((............))))))))))))))..)..).)))).)))).))))........................ (-41.06 = -41.13 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:57 2011