| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,831,824 – 8,831,883 |
| Length | 59 |
| Max. P | 0.632974 |
| Location | 8,831,824 – 8,831,883 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 83.72 |
| Shannon entropy | 0.29293 |
| G+C content | 0.42915 |
| Mean single sequence MFE | -11.82 |
| Consensus MFE | -9.01 |
| Energy contribution | -9.48 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.632974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8831824 59 + 22422827 GGCAAAUAGAAUUAAGAGACAAGACAGGGCUUACUGUAUU--GCAUAGUGAUCCCAAGUUG ..........................(((.(((((((...--..))))))).)))...... ( -11.10, z-score = -0.81, R) >droSim1.chrX_random 2607191 57 + 5698898 GGCAAAUAGAAUUAAGAGACAAGACAGGGCUUACUGUACUGUGCACAGUGAUCCCAA---- ..........................(((.(((((((.......))))))).)))..---- ( -12.70, z-score = -1.07, R) >droSec1.super_34 202770 57 + 457129 GGCAAAUAGAAUUAAGAGACAAGACAGGGCUUACUGUACUGUGCACAGUGAUCCCAA---- ..........................(((.(((((((.......))))))).)))..---- ( -12.70, z-score = -1.07, R) >droYak2.chrX 9297816 55 - 21770863 GGCAAAUAGAAUUAAGAGACAAGACAGGGCUUACUGUACU--ACACAGUGAUCCCAA---- ..........................(((.(((((((...--..))))))).)))..---- ( -13.00, z-score = -2.50, R) >droEre2.scaffold_4690 12476499 55 - 18748788 GGCAAAUAGAAUUAAGAGACAAGACAGGGCUUACUGUACA--ACACAGUGAUCCCAA---- ..........................(((.(((((((...--..))))))).)))..---- ( -13.00, z-score = -2.90, R) >droPer1.super_13 1835993 55 - 2293547 GGCAAACAGAAUUAAGCGACAACAAGACAGGGGCU-UACU-UACACUGUGCUACCAA---- ((((.....((.(((((..(.........)..)))-)).)-)......)))).....---- ( -8.40, z-score = -0.39, R) >consensus GGCAAAUAGAAUUAAGAGACAAGACAGGGCUUACUGUACU__ACACAGUGAUCCCAA____ ..........................(((.(((((((.......))))))).)))...... ( -9.01 = -9.48 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:56 2011