| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,826,310 – 8,826,402 |
| Length | 92 |
| Max. P | 0.771773 |
| Location | 8,826,310 – 8,826,402 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 94.21 |
| Shannon entropy | 0.09773 |
| G+C content | 0.43931 |
| Mean single sequence MFE | -27.38 |
| Consensus MFE | -23.02 |
| Energy contribution | -23.86 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8826310 92 + 22422827 GGCUUUUAUUUGCCCAUUUGUACGUUGUAAAUGGGGGCCACUUGCGGUUCGCAGGCAACUCAACACA--AAGGGUUAUUCAAAUUGAAGAAUAG ..((((.((((((((.(((((..(((((...((.(((((......))))).)).))))).....)))--))))).....))))).))))..... ( -25.00, z-score = -1.49, R) >droEre2.scaffold_4690 12471288 91 - 18748788 GGCUUUUAUUUGCCCAUUUGUGUGUUGUAAAUGGGGGCCACUU-CGGUUCGCAGGCAACUCAACACA--AAGGGUUAUUCAAAUUGAAGAAUAG ..((((.((((((((.((((((((((((...((.(((((....-.))))).)).)))))...)))))--))))).....))))).))))..... ( -29.80, z-score = -3.08, R) >droYak2.chrX 9292344 91 - 21770863 UUCUUUUAUUUGCCCAUUUGUGUGUCGUAAAUGGGGGCCACUU-CGGUUCGCAGGCAACUCAGCACA--AAGGGUUAUUCCAAUUGAAGAAUAG ((((((.(((.((((.(((((((((.((...((.(((((....-.))))).)).)).))...)))))--))))))......))).))))))... ( -26.20, z-score = -2.00, R) >droSec1.super_34 194227 94 + 457129 GGCUUUUAUUUGCCCAUUUGUGCGUUGUAAAUGGGGGCCACUUGCAGUUCGCAGGCAACUCAACACACAAAGGGUUAUUCAAAUUGAAGAAUAG ..((((.((((((((.((((((.((((.....((..(((...(((.....))))))..)))))).))))))))).....))))).))))..... ( -27.20, z-score = -1.77, R) >droSim1.chrX 7037240 94 + 17042790 GGCUUUUAUUUGCCCAUUUGUGCGUUGUAAAUGGGGGCCACUUGCGGUUCGCAGGCAACUCAGCACACAAAGGGUUAUUCAAAUUGAAGAAUAG ..((((.((((((((.((((((.((((....((.(((((......))))).))(....).)))).))))))))).....))))).))))..... ( -28.70, z-score = -1.74, R) >consensus GGCUUUUAUUUGCCCAUUUGUGCGUUGUAAAUGGGGGCCACUUGCGGUUCGCAGGCAACUCAACACA__AAGGGUUAUUCAAAUUGAAGAAUAG ...........((((...((((((((((...((.(((((......))))).)).)))))...)))))....))))(((((........))))). (-23.02 = -23.86 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:55 2011