| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,805,905 – 8,806,008 |
| Length | 103 |
| Max. P | 0.818340 |
| Location | 8,805,905 – 8,806,008 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 63.45 |
| Shannon entropy | 0.64153 |
| G+C content | 0.38119 |
| Mean single sequence MFE | -23.76 |
| Consensus MFE | -13.90 |
| Energy contribution | -14.26 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818340 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8805905 103 + 22422827 CGCAGUGGUACCGUGUUAGUUUCCACUUGAAAGAGCUAGCCGGUUUUACGUUCAGUUUUUAACAAGGUGAAAAUU---AAU-UAAGGUGAAAUUAAUAUAAGCAAUA------------- ...(((..((((..((((((((.(((((..(((((((...((......))...)))))))....))))).)))))---)))-...))))..))).............------------- ( -22.00, z-score = -1.22, R) >droSim1.chrX 7019480 116 + 17042790 CGCAGUGCUACCGUGUUAGCUAACAUUUGAAAAAGCUAACCGGUUUUACGUUCAGUUUGUAACAAGGUGAAAAAU---AAG-GGGAAAUAACUUUCAAAGGUCUCUAAGUGUAGGCAACA (((.(((..((((.(((((((............)))))))))))..))).((((.((((...)))).))))....---..(-((((.....((.....)).)))))..)))..(....). ( -26.40, z-score = -0.73, R) >droSec1.super_34 176740 117 + 457129 CGCAGUGCUACCGUGUUAGCUUCCAUUUGAGAAAGCUGACCGGUUUUACGUUCAGUUUGUAACAAGGUGAAAAUU---GAUAUGAAAAUAACUUUCAAAGGUGUCUAAAUGUAUGCAACA .((((((..((((.((((((((.(......).))))))))))))..))).((((.((((...)))).))))....---(((((((((.....)))))....))))........))).... ( -28.80, z-score = -1.48, R) >droYak2.chrX 9272736 120 - 21770863 CGAGGUGGUACCCUGUUAUCUGCGAUUUGCGAAAGCUAAUGGGUUUUCCGCUCAGUUUGUAACAGUGUGAGAAGUUAAGAGUCAAGAAUAACUUUAAAAUGUGUCUAAAUGUAUGCAAUA .(((.(((.(((((((.....)))(((.((....)).)))))))...))))))...((((((((....((.(..((.(((((........))))).))...).))....))).))))).. ( -25.60, z-score = -0.35, R) >droEre2.scaffold_4690 12453778 88 - 18748788 CGAGGUGGUGCCGUGUUAUCUUCAAUUUAUGAAAGCUAAUUGAUUUGCCGCUCAGUUGGUAACAGAGUGAGAAGU--AAUUGCAGAUAUG------------------------------ ....(((.(((...((((.((((.((((.((...(((((((((........)))))))))..))))))..)))))--))).)))..))).------------------------------ ( -16.00, z-score = 0.71, R) >consensus CGCAGUGGUACCGUGUUAGCUUCCAUUUGAGAAAGCUAACCGGUUUUACGUUCAGUUUGUAACAAGGUGAAAAGU___AAU_CAAAAAUAACUUUAAAAGGUCUCUAA_UGUA_GCAA_A ....((((.((((.((((((((..........)))))))))))).)))).((((.((((...)))).))))................................................. (-13.90 = -14.26 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:54 2011