| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,784,268 – 8,784,363 |
| Length | 95 |
| Max. P | 0.743226 |
| Location | 8,784,268 – 8,784,363 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 73.36 |
| Shannon entropy | 0.42315 |
| G+C content | 0.36916 |
| Mean single sequence MFE | -14.00 |
| Consensus MFE | -8.65 |
| Energy contribution | -8.15 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8784268 95 + 22422827 GCUUAUGCACCUGAUAAAACAUUUUAUUUAUAUACACACACACACA---------CACAGAGUGGCAAAAGCAAACUCCGAAAAUAUACAAAAAUGGCUUAAUA ((((.(((....((((((....))))))................((---------(.....)))))).))))................................ ( -11.00, z-score = -0.96, R) >droSim1.chrX 7001556 100 + 17042790 GCUUAUGCACCUGAUAAAACAUUUCAUUUAUAUACACACACACACAAACACA---CACAGAGUGGCAAAAGCAAACUCCGAAAAUAUA-AAAAAUGGCUUAAUA ((....))......(((..(((((..(((((((.................((---(.....)))((....))...........)))))-)))))))..)))... ( -11.00, z-score = -1.04, R) >droYak2.chrX 9252046 103 - 21770863 GCUUAUGCACCUGAUAAAACAUUUCAUUUAUAUACACACACUCACACACACAUUGCACAGAGUGGCAAAAGCAAACUCCGAAAAUAUA-AAAAAUGGCUUAAUA ((....))......(((..(((((..(((((((.....(((((................)))))((....))...........)))))-)))))))..)))... ( -14.09, z-score = -1.32, R) >droAna3.scaffold_13047 630136 77 + 1816235 GCUUAUGCACCUGAUAAAACAUUUCAUUUAUAAACACAGCCGGAGAGA-------GAGGCAGGGGCAGGGGCAGGGGCAUAAUA-------------------- (((..(((.(((((((((........))))).......(((.......-------..))).....)))).)))..)))......-------------------- ( -19.90, z-score = -2.53, R) >consensus GCUUAUGCACCUGAUAAAACAUUUCAUUUAUAUACACACACACACA_A_______CACAGAGUGGCAAAAGCAAACUCCGAAAAUAUA_AAAAAUGGCUUAAUA ((((.(((.....(((((........))))).......(((....................)))))).))))................................ ( -8.65 = -8.15 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:50 2011