| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,770,723 – 8,770,818 |
| Length | 95 |
| Max. P | 0.698848 |
| Location | 8,770,723 – 8,770,818 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 79.92 |
| Shannon entropy | 0.42035 |
| G+C content | 0.51411 |
| Mean single sequence MFE | -26.33 |
| Consensus MFE | -17.40 |
| Energy contribution | -17.22 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.698848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8770723 95 + 22422827 GUCGUCGUCGACUGAAUGGCGAACUCCAGUUCCGCGUCCAUUGUCGUGACGCGCACAUUUAGCUGAAAUUAGUAAGGGAUGUCGUGAUAUUAAAA ...((((.((((((((((((((((....)))).((((((......).))))))).))))))((((....)))).......))))))))....... ( -26.60, z-score = -0.75, R) >droGri2.scaffold_15203 6263436 80 + 11997470 GUCGUUGUCGACUGAAUGGCGAACUCCAGUUCGGCGUCCAUUGUCGUGACGCGCACAUUUAGCUGCAAGGACACGCAAAG--------------- (((.((((.(.(((((((((((((....)))).((((((......).))))))).)))))))).)))).)))........--------------- ( -31.40, z-score = -2.53, R) >droVir3.scaffold_12726 2620084 79 + 2840439 GUCGUUGUCGACUGAAUGGCAAACUCCAGUUCAGCGUCCAUUGUCGUGACGCGCACAUUUAGCUAAAAAUAUAUAUAGA---------------- ((((....))))((((((((.(((....)))..((((((......).))))))).))))))..................---------------- ( -18.20, z-score = -0.84, R) >droMoj3.scaffold_6473 11072764 91 - 16943266 GUCGUUGUCGACUGAAUGGCAAACUCCAGUUCAGCGUCCAUUGUUGUGACGCGCACAUUUAGCUACAAGUAGGAAGAGAAUUUAUAUACAA---- ....((((.(.(((((((((.(((....)))..(((((((....)).))))))).)))))))).))))(((.(((.....)))...)))..---- ( -22.70, z-score = -1.00, R) >droWil1.scaffold_181150 3966713 83 - 4952429 GUUGUUGUCGACUGGAUGGCGAACUCCAGUUCGGCGUCCAUUGUUGUAACGCGCACAUUUAGCUGCAAAGAUAAAUGAUAAGA------------ (((((((.((((((((((.(((((....))))).))))))..))))))))).)).((((((.((....)).))))))......------------ ( -28.10, z-score = -2.62, R) >droPer1.super_13 1768431 79 - 2293547 GUCGUCGUCGACUGGAUGGCAAACUCCAGUUCGGCGUCCAUGGUCGUGACGCGCACAUUCAGCUGCAAAAACGAAGAGG---------------- (.(((((.((((((((((.(.(((....))).).)))))..)))))))))))(((........))).............---------------- ( -25.00, z-score = -0.52, R) >dp4.chrXL_group1e 8041010 79 + 12523060 GUCGUCGUCGACUGGAUGGCAAACUCCAGUUCGGCGUCCAUGGUCGUGACGCGCACAUUCAGCUGCAAAAACGAAGAGG---------------- (.(((((.((((((((((.(.(((....))).).)))))..)))))))))))(((........))).............---------------- ( -25.00, z-score = -0.52, R) >droAna3.scaffold_13047 619342 76 + 1816235 GUCGUCGUCGACUGGAUGGCGAACUCCAGCUCCGCGUCCAUUGUCGUGACGCGCACAUUUAGCUGUGGGGAGGAAG------------------- .((((((((.....)))))))).((((.....(((((((......).))))))((((......)))).))))....------------------- ( -29.10, z-score = -1.08, R) >droEre2.scaffold_4690 12418914 83 - 18748788 GUCGUCGUCGACUGGAUGGCGAACUCCAGCUCCGCGUCCAUUGUCGUGACGCGCACAUUUAGCUGAAAUUAGUA-GAGACAAAA----------- (((((((((.....))))))......(((((.(((((((......).)))))).......))))).........-..)))....----------- ( -24.30, z-score = -0.70, R) >droYak2.chrX 9238184 83 - 21770863 GUCGUCGUCGACUGGAUGGCGAACUCCAGUUCCGCGUCCAUUGUCGUGACGCGCACAUUUAGCUGAAAUUAGUA-GAGGUGAAA----------- (.(((((.(((((((((((.((((....))))).))))))..)))))))))).(((.(((.((((....)))).-))))))...----------- ( -27.70, z-score = -1.49, R) >droSec1.super_34 142083 83 + 457129 GUCGUCGUCGACUGGAUGGCGAACUCCAGUUCCGCGUCCAUUGUCGUGACGCGCACAUUUAGCUGAAAUUAGCG-GAGAUAGAA----------- .((((((((.....)))))))).((((.((..(((((((......).)))))).)).....((((....)))))-)))......----------- ( -30.20, z-score = -1.95, R) >droSim1.chrX 6987861 83 + 17042790 GUCGUCGUCGACUGGAUGGCGAACUCCAGUUCCGCGUCCAUUGUCGUGACGCGCACAUUUAGCUGAAAUUAGUG-GAGAUAGAA----------- .((((((((.....)))))))).((((.((..(((((((......).)))))).)).....((((....)))))-)))......----------- ( -27.60, z-score = -1.35, R) >consensus GUCGUCGUCGACUGGAUGGCGAACUCCAGUUCCGCGUCCAUUGUCGUGACGCGCACAUUUAGCUGAAAUUAGGAAGAGA________________ ((((....))))((((((((.(((....)))..((((((......).))))))).)))))).................................. (-17.40 = -17.22 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:47 2011