| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,768,457 – 8,768,538 |
| Length | 81 |
| Max. P | 0.569798 |
| Location | 8,768,457 – 8,768,538 |
|---|---|
| Length | 81 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 69.49 |
| Shannon entropy | 0.59928 |
| G+C content | 0.36285 |
| Mean single sequence MFE | -14.62 |
| Consensus MFE | -6.58 |
| Energy contribution | -6.42 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.569798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8768457 81 + 22422827 AUAAAGUUGAACACAAAAUGGUAUCAAGACUAUAUUCAUUGGUUUUUUCGAUGCCAACAAAUAGUGAAAAAAGUGUACCGC ..........((((....((((((((((((((.......)))))))...)))))))((.....)).......))))..... ( -15.50, z-score = -1.54, R) >droAna3.scaffold_13047 617276 63 + 1816235 -------------CCAAGAUUCGACUCGAAUUUAUU-GCUGAUUC--UUUGGGAAGGUGGAUAGUUUUCAA--UUUACCGC -------------((((((.(((.(...........-).))).))--.))))...(((((((........)--)))))).. ( -11.40, z-score = -0.05, R) >droEre2.scaffold_4690 12416766 77 - 18748788 AUAAGGUUGAACACGCAGGCGAAUCAAGACUAUAUUAGUUGGUUU--UCGGUGCCAACAAAUA-GCA-AAAAGUGUACCGC ....(((...((((....(((........)..((((.((((((..--.....)))))).))))-)).-....))))))).. ( -15.40, z-score = -0.43, R) >droYak2.chrX 9235909 79 - 21770863 AUAAAGUUGAACACGAAAGCAAAUCAAGAGUAUAUUAGUUGGUUU--UCGGUGCCAACAAAUAUAUAUAAAAGUAUACCGC ......((((...(....)....))))..(((((((.((((((..--.....)))))).)))))))............... ( -14.50, z-score = -2.11, R) >droSec1.super_34 139906 77 + 457129 AUAAAGUUGGACACAGAAUGGUAUCAAGACUAUAUUCGUUGGUUU--UCGGUGCCAACAAAUAGU--AAAAAGUAUACCGC .....(((((.(((.(((....(((((((......)).))))).)--)).)))))))).......--.............. ( -15.30, z-score = -1.24, R) >droSim1.chrX 6985682 77 + 17042790 AUACAGAUGGACACAAAAUGGUAUCAAGACUAUAUUGGUUGGUUU--UCGGUGCCAACAAAUAGU--AAAAAGUAUACCGC ((((...((....))...((((((((((((((.......))))))--).))))))).........--.....))))..... ( -15.60, z-score = -1.15, R) >consensus AUAAAGUUGAACACAAAAUGGUAUCAAGACUAUAUUAGUUGGUUU__UCGGUGCCAACAAAUAGU_AAAAAAGUAUACCGC ................................((((.((((((.........)))))).)))).................. ( -6.58 = -6.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:46 2011