| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,762,647 – 8,762,751 |
| Length | 104 |
| Max. P | 0.691674 |
| Location | 8,762,647 – 8,762,751 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 97.67 |
| Shannon entropy | 0.04165 |
| G+C content | 0.48839 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -30.66 |
| Energy contribution | -30.34 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8762647 104 - 22422827 AUGUGUGUCUAAUGGAGUGACUAAGUGGCCCGGCUGCCACUGCUUCUGCUUCCUGCUCGCUGCCAAAGUUGGUGGCACAAUUAAUUAAAUGUUGCAUAACAAAA .(((((........((((.....((((((......))))))((....)).....))))((..(((....)))..)).................)))))...... ( -27.80, z-score = -0.35, R) >droSim1.chrX 6979885 102 - 17042790 --GUGUGUCUAAUGGAGUGACUAAGUGGCCCGGCUGCCACUGCUUCUGCUUCCUGCUCGCUGCCAAAGUUGGCGGCACAAUUAAUUAAACGUUGCAUAACAAAA --.(((((..((((((((.....((((((......))))))((....)).....))))(((((((....))))))).............)))))))))...... ( -31.50, z-score = -1.34, R) >droSec1.super_34 134269 102 - 457129 --GUGUGUCUAAUGGAGUGACUAAGUGGCCCGGCUGCCACUGCUUCUGCUUCCUGCUCGCUGCCAAAGUUGGCGGCACAAUUAAUUAAACGUUGCAUAACAAAA --.(((((..((((((((.....((((((......))))))((....)).....))))(((((((....))))))).............)))))))))...... ( -31.50, z-score = -1.34, R) >droYak2.chrX 9230026 102 + 21770863 --GUGUGUCUAAUGGAGUGACUAAGUGGCCCGGCUGCCACUGCUUCUGCUUCCUGCUCGCUGCCAAAGUUGGCGGCACAAUUAAUUAAACGUUGCAUAACAAAA --.(((((..((((((((.....((((((......))))))((....)).....))))(((((((....))))))).............)))))))))...... ( -31.50, z-score = -1.34, R) >droEre2.scaffold_4690 12411071 102 + 18748788 --GUGUGUCUAAUGGAGUGACUAAGUGGCCCGGCUGCCACUGCUUCUGCUUCCUGCUCGCUGCCAAAGUUGGCGGCACAAUUAAUUAGGCGUUGCAUAACAAAA --(((((((((((.((((.....((((((......))))))((....)).....))))(((((((....))))))).......)))))))...))))....... ( -34.70, z-score = -1.34, R) >consensus __GUGUGUCUAAUGGAGUGACUAAGUGGCCCGGCUGCCACUGCUUCUGCUUCCUGCUCGCUGCCAAAGUUGGCGGCACAAUUAAUUAAACGUUGCAUAACAAAA ...(((((..((((((((.....((((((......))))))((....)).....))))(((((((....))))))).............)))))))))...... (-30.66 = -30.34 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:45 2011