| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,735,928 – 8,735,987 |
| Length | 59 |
| Max. P | 0.940696 |
| Location | 8,735,928 – 8,735,987 |
|---|---|
| Length | 59 |
| Sequences | 12 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 72.69 |
| Shannon entropy | 0.53707 |
| G+C content | 0.32481 |
| Mean single sequence MFE | -8.32 |
| Consensus MFE | -4.06 |
| Energy contribution | -3.88 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.940696 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 8735928 59 + 22422827 --UGC-GAAAUUCCAUUUACUUUCUAUAUGGAAA---UCUAUGUGCACACUCGAAAACAUAAAGG --...-....((((((.((.....)).)))))).---..(((((.(......)...))))).... ( -6.80, z-score = -0.79, R) >droSim1.chrX 6953438 60 + 17042790 --UGC-GAAAUUCCAUUUACUUUCUAUAUGGAAAA--UCUAUGUGCACACUCGAAAACAUAAAAG --...-((..((((((.((.....)).))))))..--))(((((.(......)...))))).... ( -7.30, z-score = -1.50, R) >droSec1.super_34 108121 59 + 457129 --UGC-GAAAUUCCAUUUACUUUCUAUAUGGAAA---UCUAUGUGCACACUCGAAAACAUAAAGG --...-....((((((.((.....)).)))))).---..(((((.(......)...))))).... ( -6.80, z-score = -0.79, R) >droYak2.chrX 9202520 59 - 21770863 --UGC-GAAAUUCCAUUUACUUUCUAUAUGGAAA---UCUAUGUGCACACUCGAAAACAUAAAGG --...-....((((((.((.....)).)))))).---..(((((.(......)...))))).... ( -6.80, z-score = -0.79, R) >droEre2.scaffold_4690 12382306 59 - 18748788 --UGC-GAAAUUCCAUUUACUUUCUAUAUGGAAA---UCUAUGUGCACACUCGAAAACAUAAAGG --...-....((((((.((.....)).)))))).---..(((((.(......)...))))).... ( -6.80, z-score = -0.79, R) >droAna3.scaffold_13047 585348 59 + 1816235 --UGC-GAAAUUCCAUUUACUUUCUAUAUGGAAA---UCCAUUUGCGCUGCUAAAAAUGGCAAGA --.((-(((.((((((.((.....)).)))))).---....)))))..(((((....)))))... ( -11.20, z-score = -1.11, R) >dp4.chrXL_group1e 8008771 53 + 12523060 --UGC-GAGAUUCCAUUUACUUUCUAUAUGGAAAUAUAUUUUGCACACACACGAAA--------- --(((-((((((((((.((.....)).))))).....))))))))...........--------- ( -9.50, z-score = -3.35, R) >droPer1.super_13 1736441 53 - 2293547 --UGC-GAGAUUCCAUUUACUUUCUAUAUGGAAAUAUAUUUUGCACACACACGAAA--------- --(((-((((((((((.((.....)).))))).....))))))))...........--------- ( -9.50, z-score = -3.35, R) >droWil1.scaffold_181150 1054649 50 + 4952429 --CGCGCAAAUUCCAUUUACUUUCUUUAUGGAAA---UGUGCACCUACAUACAAA---------- --.(((((..((((((...........)))))).---))))).............---------- ( -11.50, z-score = -3.82, R) >droVir3.scaffold_12726 266693 50 - 2840439 UGCGCAGAAAUUUCAUUUACUUUCUAUAUGGAAA---UAUUUGCACAC--UUUAA---------- ((.(((((.(((((................))))---).))))).)).--.....---------- ( -7.89, z-score = -1.85, R) >droMoj3.scaffold_6473 5921720 50 + 16943266 UGCGCAGAAAUUUCAUUUACUUUCUAUAUGGAAA---UAUUUGCACAC--UUUAA---------- ((.(((((.(((((................))))---).))))).)).--.....---------- ( -7.89, z-score = -1.85, R) >droGri2.scaffold_14853 1422782 52 - 10151454 UGCGCAGAAAUUUCAUUUACUUUCUAUAUGGAAA---UAUUUGCACACACUUCAA---------- ((.(((((.(((((................))))---).))))).))........---------- ( -7.89, z-score = -2.16, R) >consensus __UGC_GAAAUUCCAUUUACUUUCUAUAUGGAAA___UCUAUGCGCACACUCGAAA_________ ..........((((((...........))))))................................ ( -4.06 = -3.88 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:44 2011