| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,673,913 – 10,674,010 |
| Length | 97 |
| Max. P | 0.607867 |
| Location | 10,673,913 – 10,674,010 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 79.96 |
| Shannon entropy | 0.34080 |
| G+C content | 0.33630 |
| Mean single sequence MFE | -18.56 |
| Consensus MFE | -12.81 |
| Energy contribution | -13.31 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10673913 97 - 23011544 CAGGAAUAUUAAUUUAAGCCGUCCAAUGACAUUUUUUCGUUAUGCUUUUCAGCAUUUACAAGAGGUAAUGC-UUUCGGUUUAAUUUCAUGUUU-GGUUA ...((((((.((.((((((((((....)))(((((((.((.(((((....)))))..))))))))).....-....))))))).)).))))))-..... ( -19.80, z-score = -1.88, R) >droSim1.chr2L 10472024 97 - 22036055 CAGGAAUAUUAAUUUAAGCCGUCCAAUGACAUUUUUUCGUCCUGCUCUUCAGCAUUUAAAAGAAGUAAUGC-UUUCGGCUUAAUUUCAUGUUU-GGUUA ...((((((.((.((((((((......(.((((.((((....((((....)))).......)))).)))))-...)))))))).)).))))))-..... ( -20.40, z-score = -1.84, R) >droSec1.super_3 6091518 98 - 7220098 CAGGAAUAUUAAUUUAAGCCGUCCAAUGACAUUUUUUCGUCCUGCUCUUCAGCAUUUAAAAGAAGUAAUGC-UUUCGGCUUAAUUUCAUGUUUGGGUUA ...((((((.((.((((((((......(.((((.((((....((((....)))).......)))).)))))-...)))))))).)).))))))...... ( -20.40, z-score = -1.39, R) >droYak2.chr2L 7078499 84 - 22324452 CUCGAAUAUUAAUUGAAGCCGCCCAAUGACAUUUUUUCAGCC------------UUUUUAAGAAGUAAAGCUUCUCGGCUUGUUU--AUGUUU-GGUUA .((((((((.(((..((((((.....(((.......)))...------------......(((((.....)))))))))))))).--))))))-))... ( -16.90, z-score = -1.17, R) >droEre2.scaffold_4929 11882683 85 + 26641161 CAGGAAUAUUAAUUUAAACCGUUCAGUGACAUUUUUUUACCC------------UCUAAAAGAAGUAAUGCUUUUCGGCUUAAUUU-GUGUUC-GGUUA ...((((((....((((.(((...(((.((.((((((((...------------..))))))))))...)))...))).))))...-))))))-..... ( -15.30, z-score = -1.02, R) >consensus CAGGAAUAUUAAUUUAAGCCGUCCAAUGACAUUUUUUCGUCCUGCU_UUCAGCAUUUAAAAGAAGUAAUGC_UUUCGGCUUAAUUUCAUGUUU_GGUUA ...((((((.((.((((((((.........(((((((.....(((......))).....))))))).........)))))))).)).))))))...... (-12.81 = -13.31 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:42 2011