| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,725,351 – 8,725,446 |
| Length | 95 |
| Max. P | 0.635506 |
| Location | 8,725,351 – 8,725,446 |
|---|---|
| Length | 95 |
| Sequences | 9 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.84 |
| Shannon entropy | 0.48423 |
| G+C content | 0.55563 |
| Mean single sequence MFE | -30.74 |
| Consensus MFE | -11.11 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8725351 95 - 22422827 CGGACACAAAGUGCGACC--UCAACAG--AUGGACCUCACACUAAGCCGUCGGCUUUGCCAGCAAAUCCACUCGGCAUU-CAGCGGUCGCAC-UUCUUGCC------------- .((.((..((((((((((--......(--((((.............))))).(((.((((((........)).))))..-.)))))))))))-))..))))------------- ( -34.62, z-score = -3.70, R) >droSim1.chrX 6943224 95 - 17042790 CGGAUACAAAGUGCGACC--UCAACAG--AUGGACCUCACACUAAGCCGUCGGCUUUGCCAGCAAAUCCACUCGGCAUU-CAGCGGUCGCAC-UUCUCGCC------------- .((.....((((((((((--......(--((((.............))))).(((.((((((........)).))))..-.)))))))))))-))....))------------- ( -32.42, z-score = -3.13, R) >droSec1.super_34 98397 95 - 457129 CGGAUACAAAGUGCGACC--UCAACAG--AUGGACCUCACACUAAGCCGUCGGCUUUGCCAGCAAAUCCACUCGGCAUU-CAGCGGUCGCAC-UUCUCGCC------------- .((.....((((((((((--......(--((((.............))))).(((.((((((........)).))))..-.)))))))))))-))....))------------- ( -32.42, z-score = -3.13, R) >droYak2.chrX 9189697 95 + 21770863 CGGACACAAAGUGCGACC--UCAACAG--AUGGACCUCACACUAAGCCGUCGGCUUUGCCAGCAAAUCCACUCGGCAUU-CAGCGGUCGCAC-UUCUCGCC------------- .((.....((((((((((--......(--((((.............))))).(((.((((((........)).))))..-.)))))))))))-))....))------------- ( -32.42, z-score = -3.10, R) >droEre2.scaffold_4690 12372831 107 + 18748788 CGGAUACAAAGUGCGACC--UCAACAG--AUGGACCUCACACUAAGCCGUCGGCUUUG-CAGCAAAUCCACUCGGCAUU-CAGCGGUCGCAC-UUCGCACCUCGCACCUCGCAC .((.....((((((((((--......(--(((((.........(((((...)))))..-.......)))).)).((...-..))))))))))-)).((.....)).))...... ( -31.47, z-score = -1.90, R) >droAna3.scaffold_13047 574880 102 - 1816235 CAGAUACAAAGUACUGCC---CACCAG--CUGGACCUCACACUAAGCUGUCGGAUUUGCCACCAAAUCCACUCGGCAUU-CAGCGGUUCGACGGUCGCACUUUCGUUC------ .....(((((((..((((---...(((--((((........)).)))))..(((((((....)))))))....))))..-..(((..(....)..)))))))).))..------ ( -25.30, z-score = -0.73, R) >droVir3.scaffold_12726 281678 91 + 2840439 CAGGUACAAAGUGCAAGCAGGCAGCUG--UUGUGCCUCACACUAAGCUGUCGGGUUUAGCGACAAAUCCACUCGGUGUUGCAACCUUUGCAUC--------------------- ..........((((((...(((((((.--..(((.....)))..)))))))(((((..((((((...((....))))))))))))))))))).--------------------- ( -30.90, z-score = -1.56, R) >droMoj3.scaffold_6473 5937207 93 - 16943266 CAGGUACAAAGUGCAACCAGGCAGCAGCUGUGUGCCUCACACUAAGCUGUCGAGCUUAGCGACAAAUCCACUCGUUGUUGCAGCCUCCGCAGC--------------------- .(((((((.(((((.........))).)).)))))))........(((((.(((((..(((((((.........))))))))).))).)))))--------------------- ( -29.80, z-score = -0.57, R) >droGri2.scaffold_14853 1439899 90 + 10151454 CAGGUACAGAGUGCAACCAGGCAGCUG---UGUGUCUCACACUAAGCUGUCGGCUUUAGCGACAAAUCCACUCGGUAUUGCAUCCUCCACAUC--------------------- ..((...((..(((((((.((((((((---((((...)))))..))))))).((....)).............)))..))))..)))).....--------------------- ( -27.30, z-score = -1.69, R) >consensus CGGAUACAAAGUGCGACC__UCAACAG__AUGGACCUCACACUAAGCCGUCGGCUUUGCCAGCAAAUCCACUCGGCAUU_CAGCGGUCGCAC_UUCUCGCC_____________ ..........(((((((.............((.......))....((((..((.(((......))).))...)))).........)))))))...................... (-11.11 = -11.70 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:42 2011