| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,710,723 – 8,710,783 |
| Length | 60 |
| Max. P | 0.996196 |
| Location | 8,710,723 – 8,710,783 |
|---|---|
| Length | 60 |
| Sequences | 9 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 74.73 |
| Shannon entropy | 0.48956 |
| G+C content | 0.45993 |
| Mean single sequence MFE | -18.36 |
| Consensus MFE | -11.12 |
| Energy contribution | -11.46 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.90 |
| SVM RNA-class probability | 0.996196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8710723 60 + 22422827 AAAAAGUGUUUACUUUAUGCUCCGGGGCAUAAAGU-CGACUG------CAUGGACAUAUCUUGUUCC .....(((((.((((((((((....))))))))))-.))).)------)..(((((.....))))). ( -19.40, z-score = -3.60, R) >droSim1.chrX 6928659 60 + 17042790 AAAAAGUGUUUACUUUGUGCUCCGGGGCAUAAAGU-CGACUG------CAUGGACAUAUCUUGUUCC .....(((((.((((((((((....))))))))))-.))).)------)..(((((.....))))). ( -19.40, z-score = -3.24, R) >droSec1.super_34 84103 60 + 457129 AAAAAGUGUUUACUUUGUGCUCCGGGGCAUAAAGU-CGACUG------CAUGGACAUAUCUUGUUCC .....(((((.((((((((((....))))))))))-.))).)------)..(((((.....))))). ( -19.40, z-score = -3.24, R) >droYak2.chrX 9175377 60 - 21770863 AAAAAGUGUUUACUUUGUGCUCCGGGGCAUAAAGU-CGACUG------CAUGGACAUAUCUUGUUCC .....(((((.((((((((((....))))))))))-.))).)------)..(((((.....))))). ( -19.40, z-score = -3.24, R) >droEre2.scaffold_4690 12358473 60 - 18748788 AAAAAGUGUUUACUUUGUGCUCCGGGGCAUAAAGU-CGACUG------CAUGGACAUAUCUUGUUCC .....(((((.((((((((((....))))))))))-.))).)------)..(((((.....))))). ( -19.40, z-score = -3.24, R) >droAna3.scaffold_13047 561226 54 + 1816235 AAAAAGUGUUUACUUUGUGCUCCGGGGCAUAAAGU-CGAAUG------CAUGGUCACAUCG------ .....((((((((((((((((....))))))))))-.)))))------)............------ ( -17.10, z-score = -3.15, R) >droVir3.scaffold_12726 2541863 58 + 2840439 AAAGUGUGUUUACUUUGUGCUGCAGGGCAUAAAGU-CGCAUGGUUGGCCACGGACGCAC-------- ...((((((((((((((((((....))))))))))-....(((....))).))))))))-------- ( -21.20, z-score = -2.03, R) >droMoj3.scaffold_6473 10985884 59 - 16943266 AGAGAGUGUUUACUUUGUGCUGCGGGGCAUAAAGUCCUCGUCUUGCCACAUGUAGCUGC-------- ..(((((....)))))..((((((.((((....(....)....))))...))))))...-------- ( -15.30, z-score = 0.06, R) >droGri2.scaffold_14853 8693464 52 + 10151454 AAAGUGUGCUCACUUUGUGCUUCGGGGCGUA-----UGGAUGGU---CCAUGGACGCAUU------- ..((((((.((.....((.(....).)).((-----(((.....---)))))))))))))------- ( -14.60, z-score = -0.63, R) >consensus AAAAAGUGUUUACUUUGUGCUCCGGGGCAUAAAGU_CGACUG______CAUGGACAUAUCUUGUUCC .....((((((((((((((((....))))))))))................)))))).......... (-11.12 = -11.46 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:40 2011